1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TTGCGCATGGATGACATTCCCGTCCTGTTGAGCGAGTATGGAAGGCTGCTTTCAACATGAGATGGTGTCTTGCAAGCTGTGCCCTCCTGCTTGgtatgtgctcttgagcgtcaccgctgtgttaggctgttaggacatcattttctgcttgcggtgcggaactgtttcagcttttggtctcacacatgtcatcttcactctttgcttcag
species | Zea mays |
transcript | GRMZM2G351160_T01 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: GGCTGCTTTCAACATGAGATGGTGTCTTGCAAGCTGTGCCCTCCTGCTTG GTCCTAACAGAACTTCTGCTCCATGTAATTTGCGGAGAACTTTCTGCCTGAEST: gi|6056866|gb|AW091271.1|AW091271
genomic: GGCTGCTTTCAACATGAGATGGTGTCTTGCAAGCTGTGCCCTCCTGCTTGgtatgtgctc ... tttgcttcagGTCCTAACAGAACTTCTGCTCCATGTAATTTGCGGAGAACTTTCTGCCTGA
EST: GGCTGCTTTCAACATGAGATGGTGTCTTGCAAGCTGTGCCCTCCTGCTTG GTCCTAACAGAACTTCTGCTCCATGTAATTTGCGGAGAACTTTCTGCCTGAEST: gi|78114120|gb|DV532509.1|DV532509
genomic: GGCTGCTTTCAACATGAGATGGTGTCTTGCAAGCTGTGCCCTCCTGCTTGgtatgtgctc ... tttgcttcagGTCCTAACAGAACTTCTGCTCCATGTAATTTGCGGAGAACTTTCTGCCTGA
EST: GGCTGCTTTCAACATGAGATGGTGTCTTGCAAGCTGTGCCCTCCTGCTTG GTCCTAACAGAACTTCTGCTCCATGTAATTTGCGGAGAACTTTCTGCCTGAEST: gi|76020392|gb|DT947562.1|DT947562
genomic: GGCTGCTTTCAACATGAGATGGTGTCTTGCAAGCTGTGCCCTCCTGCTTGgtatgtgctc ... tttgcttcagGTCCTAACAGAACTTCTGCTCCATGTAATTTGCGGAGAACTTTCTGCCTGA
EST: GGCTGCTTTCAACATGAGATGGTGTCTTGCAAGCTGTGCCCTCCTGCTTG GTCCTAACAGAACTTCTGCTCCATGTAATTTGCGGAGAACTTTCTGCCTGAEST: gi|18179473|gb|BM380683.1|BM380683
genomic: GGCTGCTTTCAACATGAGATGGTGTCTTGCAAGCTGTGCCCTCCTGCTTGgtatgtgctc ... tttgcttcagGTCCTAACAGAACTTCTGCTCCATGTAATTTGCGGAGAACTTTCTGCCTGA
EST: GGCTGCTTTCAACATGAGATGGTGTCTTGCAAGCTGTGCCATCCTGCTTG GTCCTAACAGAACTTCTGCTCCATGTAATTTGCGGAGAACTTTCTGCCTGAEST: gi|16925845|gb|BM078913.1|BM078913
genomic: GGCTGCTTTCAACATGAGATGGTGTCTTGCAAGCTGTGCCCTCCTGCTTGgtatgtgctc ... tttgcttcagGTCCTAACAGAACTTCTGCTCCATGTAATTTGCGGAGAACTTTCTGCCTGA
EST: GGCTGCTTTCAACATGAGATGGTGTCTTGCAAGCTGTGCCCTCCTGCTTG GTCCTAACAGAACTTCTGCTCCATGTAATTTGCGGAGAACTTTCTGCCTGAEST: gi|148938634|gb|EC882965.2|EC882965
genomic: GGCTGCTTTCAACATGAGATGGTGTCTTGCAAGCTGTGCCCTCCTGCTTGgtatgtgctc ... tttgcttcagGTCCTAACAGAACTTCTGCTCCATGTAATTTGCGGAGAACTTTCTGCCTGA
EST: GGCTGCTTTCAACATGAGATGGTGTCTTGCAAGCTGTGCCCTCCTGCTTG GTCCTAACAGAACTTTTGCTCCATGTAATTTGCGGAGAACTTTCTGCCTGAEST: gi|4966642|gb|AI691498.1|AI691498
genomic: GGCTGCTTTCAACATGAGATGGTGTCTTGCAAGCTGTGCCCTCCTGCTTGgtatgtgctc ... tttgcttcagGTCCTAACAGAACTTCTGCTCCATGTAATTTGCGGAGAACTTTCTGCCTGA
EST: GATGGTGTCTTGCAAGCTGTGCCCTCCTGCTTG GTCCTAACAGAACTTCTGCTCCATGTAATTTGCGGAGAACTTTCTGCCTGAEST: gi|50331223|gb|CO526349.1|CO526349
genomic: GATGGTGTCTTGCAAGCTGTGCCCTCCTGCTTGgtatgtgctc ... tttgcttcagGTCCTAACAGAACTTCTGCTCCATGTAATTTGCGGAGAACTTTCTGCCTGA
EST: GGCTGCTTTCAACATGAGATGGTGTCTTGCAAGCTGTGCCCTCCTGCTTG GTCCTAACAGAACTTCTGCTCCATGTAATTTGCGGAGAACTTTCTGCCTGA
genomic: GGCTGCTTTCAACATGAGATGGTGTCTTGCAAGCTGTGCCCTCCTGCTTGgtatgtgctc ... tttgcttcagGTCCTAACAGAACTTCTGCTCCATGTAATTTGCGGAGAACTTTCTGCCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCGCATGGATGACATTCCCGTCCTGTTGAGCGAGTATGGAAGGCTGCTTTCAACATGAGATGGTGTCTTGCAAGCTGTGCCCTCCTGCTTGgtatgtgctcttgagcgtcaccgctgtgttaggctgttaggacatcattttctgcttgcggtgcggaactgtttcagcttttggtctcacacatgtcatcttcactctttgcttcag
- - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG