1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
GAACAGGTTTTTGGCCGCGGGGGACGAATTCATGATTAAGATATGGGACATGGACAGCACGGGTCTTCTGACTACCATTGATGCTGATGGTGGCTTAACTgtgagttgtttttcttatcctcttgtgtgcttccttttgttgaatagttgattgcatataatgaagtatggaatttccctgttatattaacatggaccataatcatcag
species | Zea mays |
transcript | GRMZM2G030422_T02 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: TGGACAGCACGGGTCTTCTGACTACCATTGATGCTGATGGTGGCTTAACT GCAAGTCCACGGATACGCTTCAACAAGGAGGGAACTCTATTGGCTGTCTCCEST: gi|22490238|gb|BU050161.1|BU050161
genomic: TGGACAGCACGGGTCTTCTGACTACCATTGATGCTGATGGTGGCTTAACTgtgagttgtt ... taatcatcagGCAAGTCCACGGATACGCTTCAACAAGGAGGGAACTCTATTGGCTGTCTCC
EST: TGGACAGCACGGGTCTTCTGACTACCATTGATGCTGATGGTGGCTTAACT GCAAGTCCACGGATACGCTTCAACAAGGAGGGAACTCTATTGGCTGTCTCCEST: gi|211270985|gb|FL032966.1|FL032966
genomic: TGGACAGCACGGGTCTTCTGACTACCATTGATGCTGATGGTGGCTTAACTgtgagttgtt ... taatcatcagGCAAGTCCACGGATACGCTTCAACAAGGAGGGAACTCTATTGGCTGTCTCC
EST: TGGACAGCACGGGTCTTCTGACTACCATTGATGCTGATGGTGGCTTAACT GCAAGTCCACGGATACGCTTCAACAAGGAGGGAACTCTATTGGCTGTCTCCEST: gi|31360139|gb|CD444496.1|CD444496
genomic: TGGACAGCACGGGTCTTCTGACTACCATTGATGCTGATGGTGGCTTAACTgtgagttgtt ... taatcatcagGCAAGTCCACGGATACGCTTCAACAAGGAGGGAACTCTATTGGCTGTCTCC
EST: TGGACGGGGCGGGTCTTCTGACTACCATTGATGCTGATGGTGGCTTAACT GCAAGTCCACGGATACGCTTCAACAAGGAGGGAACTCTATTGGCTGTCTCCEST: gi|87152395|gb|DY397184.1|DY397184
genomic: TGGACAGCACGGGTCTTCTGACTACCATTGATGCTGATGGTGGCTTAACTgtgagttgtt ... taatcatcagGCAAGTCCACGGATACGCTTCAACAAGGAGGGAACTCTATTGGCTGTCTCC
EST: TGGACAGCACGGGTCTTCTGACTACCATTGATGCTGATGGTGGCTTAACT GCAAGTCCACGGATACGCTTCAACAAGGAGGGAACTCTATTGGCTGTCTCCEST: gi|211270984|gb|FL032965.1|FL032965
genomic: TGGACAGCACGGGTCTTCTGACTACCATTGATGCTGATGGTGGCTTAACTgtgagttgtt ... taatcatcagGCAAGTCCACGGATACGCTTCAACAAGGAGGGAACTCTATTGGCTGTCTCC
EST: TGGACAGCACGGGTCTTCTGACTACCATTGATGCTGATGGTGGCTTAACT GCAAGTCCACGGATACGCTTCAACAAGGAGGGAACTCTATTGGCTGTCTCCEST: gi|31356149|gb|CD440506.1|CD440506
genomic: TGGACAGCACGGGTCTTCTGACTACCATTGATGCTGATGGTGGCTTAACTgtgagttgtt ... taatcatcagGCAAGTCCACGGATACGCTTCAACAAGGAGGGAACTCTATTGGCTGTCTCC
EST: TGGACAGCACGGGTCTTCTGACTACCATTGATGCTGATGGTGGCTTAACT GCAAGTCCACGGATACGCTTCAACAAGGAGGGAACTCTATTGGCTGTCTCC
genomic: TGGACAGCACGGGTCTTCTGACTACCATTGATGCTGATGGTGGCTTAACTgtgagttgtt ... taatcatcagGCAAGTCCACGGATACGCTTCAACAAGGAGGGAACTCTATTGGCTGTCTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACAGGTTTTTGGCCGCGGGGGACGAATTCATGATTAAGATATGGGACATGGACAGCACGGGTCTTCTGACTACCATTGATGCTGATGGTGGCTTAACTgtgagttgtttttcttatcctcttgtgtgcttccttttgttgaatagttgattgcatataatgaagtatggaatttccctgttatattaacatggaccataatcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG