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GGTGTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGgtagatgatgaattctctgtagagttcagatgactactttatcccacaaatgaccataaatgctatcccctctgtattttatataaatgttacaacagaa...
species | Zea mays |
transcript | GRMZM2G381933_T04 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GAATCTTACTGGAAAG GATAACCAGAGGGTAGATGCGGCTGCTGAGAAGCTGACAAGCAGCTTTGAAEST: gi|50332159|gb|CO527285.1|CO527285
genomic: GAATCTTACTGGAAAGgtagatgatg ... ataatttcagGATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAA
EST: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAG GATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAAEST: gi|211222853|gb|FL456563.1|FL456563
genomic: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGgtagatgatg ... ataatttcagGATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAA
EST: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTCTGAATCTTACTGGAAAG GATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAAEST: gi|4628225|gb|AI619099.1|AI619099
genomic: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGgtagatgatg ... ataatttcagGATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAA
EST: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAG GATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAAEST: gi|60359540|gb|DN226513.1|DN226513
genomic: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGgtagatgatg ... ataatttcagGATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAA
EST: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAG GATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAAEST: gi|71767360|gb|DR965297.1|DR965297
genomic: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGgtagatgatg ... ataatttcagGATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAA
EST: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAG GATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAAEST: gi|60396268|gb|DN229137.1|DN229137
genomic: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGgtagatgatg ... ataatttcagGATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAA
EST: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAG GATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAAEST: gi|5706282|gb|AI942058.1|AI942058
genomic: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGgtagatgatg ... ataatttcagGATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAA
EST: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAG GATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGCCAAGCAGCTTTGAAEST: gi|60351624|gb|DN218597.1|DN218597
genomic: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGgtagatgatg ... ataatttcagGATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAA
EST: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAG GATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAAEST: gi|71756800|gb|DR954737.1|DR954737
genomic: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGgtagatgatg ... ataatttcagGATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAA
EST: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAG GATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAAEST: gi|31628473|gb|CD526625.1|CD526625
genomic: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGgtagatgatg ... ataatttcagGATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAA
EST: AGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAG GATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAAEST: gi|60394781|gb|DN227651.1|DN227651
genomic: AGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGgtagatgatg ... ataatttcagGATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAA
EST: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAG GATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAAEST: gi|8516501|gb|BE123226.1|BE123226
genomic: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGgtagatgatg ... ataatttcagGATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAA
EST: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAG GATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAAEST: gi|56382643|gb|CV985312.1|CV985312
genomic: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGgtagatgatg ... ataatttcagGATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAA
EST: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTGCTGGAAAG GATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAAEST: gi|71767359|gb|DR965296.1|DR965296
genomic: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGgtagatgatg ... ataatttcagGATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAA
EST: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAG GATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAAEST: gi|74242521|gb|DT650435.1|DT650435
genomic: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGgtagatgatg ... ataatttcagGATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAA
EST: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAG GATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAAEST: gi|37386793|gb|CF630585.1|CF630585
genomic: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGgtagatgatg ... ataatttcagGATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAA
EST: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAG GATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAAEST: gi|211222854|gb|FL456564.1|FL456564
genomic: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGgtagatgatg ... ataatttcagGATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAA
EST: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTCTGAATCTTACTGGAAAG GATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAAEST: gi|8665487|gb|BE186303.1|BE186303
genomic: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGgtagatgatg ... ataatttcagGATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAA
EST: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAG GATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAAEST: gi|60351898|gb|DN218871.1|DN218871
genomic: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGgtagatgatg ... ataatttcagGATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAA
EST: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAG GATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAAEST: gi|211035729|gb|FL441186.1|FL441186
genomic: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGgtagatgatg ... ataatttcagGATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAA
EST: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTCTGAATCTTACTGGAAAG GATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAA
genomic: GTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGgtagatgatg ... ataatttcagGATAACCAGAGGGTAGATGCGGCTGCCGAGAAGCTGACAAGCAGCTTTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGTCATCGGATATCAAGAGCTGGTCCTTTGGTTGTGAATCTTACTGGAAAGgtagatgatgaattctctgtagagttcagatgactactttatcccacaaatgaccataaatgctatcccctctgtattttatataaatgttacaacagaa
- - - - - - - - AGAGCT