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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCACTAGCTTCAGCTGATGTTGGAATCGCAATGGGTGGAGGTGTTGGGGCAGCTAGTGATGTATCTTCAGTTGTACTTATGGGCAACAGGTTATCCCAGgtaatttctttcactgcagtttggaatttttttgtatcaatcaagtgtaaaacattgcggtcatttctttacatacctgacgttgctgtataactcaatagattccctttccccctagtcccctaccactatgattcttaaaaatatgtcccttcgatgcag

Basic information

species Zea mays
transcript GRMZM2G315931_T02
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G315931_T02 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os08g37950.1 (Oryza sativa), 5'ss of exon 15
AGCACTAGCTTCAGCTGATGTTGGAATCGCAATGGGTGGAGGTGTTGGGGCAGCTAGTGATGTATCTTCAGTTGTACTTATGGGCAACAGGTTATCCCAGgtaatttctttcactgcagtttggaatttttttgtatcaatcaagtgtaaaacattgcggtcatttctttacatacctgacgttgctgtataactcaatagattccctttccccctagtcccct---accactatgattcttaaaaata--------tgtcccttcgatgcag
|||||||||||||||||||||||| || || ||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||| || ||||| |||||||| || |   |  || |||| |||||     |     | |||  | ||| ||      || |  |||  || | ||   ||||||    |||||||  | |     |     ||  ||  |   | | ||    ||| | |||| |        | | | |   ||||||
AGCACTAGCTTCAGCTGATGTTGGCATTGCTATGGGTGGAGGTGTTGGTGCGGCTAGTGATGTGTCTTCAGTTGTGCTTATGGGCAATAGATTATCTCAGgtaatctcatatgcaacaatttgaaatttgcgaattc---ttaagcatgaaaaatc-----cactgttttgtattcttggtattgctgccagactcaattaacttttactttttgtatgccgatttaatctcttcttttcctgaaaaaaaattcgagtcttcttgtcatgcag

upper sequence: GRMZM2G315931_T02 (Zea mays), 5'ss of exon 15
lower sequence: Vv12s0142g00330.t01 (Vitis vinifera), 5'ss of exon 7
AGCACTAGCTTCAGCTGATGTTGGAATCGCAATGGGTGGAGGTGTTGGGGCAGCTAGTGATGTATCTTCAGTTGTACTTATGGGCAACAGGTTATCCCAGgtaatttctttcactgcagtttggaatttttttgtatcaatcaagtgtaaaacattgcg-gtcatttctttacatacctgacgttgctgtataactcaatagattccctttccccctagtcccctaccactatgattcttaaaaatatgtcccttcgatgcag
 ||| | |||||| | ||| |||||||||| |||||||| |||||||| || |||||||| || |||||  |||| || |||||||||||| | || |||||| ||||| ||| || |   |     ||   | |  ||| |   |       ||||   ||  ||||  ||   |  | |||   |  ||||    |  | |||                                                          
TGCATTGGCTTCATCAGATATTGGAATCGCTATGGGTGGGGGTGTTGGAGCTGCTAGTGAGGTGTCTTCTATTGTCCTGATGGGCAACAGGCTTTCACAGgtattttctgtcaatgtatcct-----ttcaatttgacaagcctttcctggtaattgtatgttctttcactaagaaattaacgaaacaatatagaagaggaaatt----------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211170369|gb|FL103278.1|FL103278
EST:     CAGCTAGTGATGTATCTTCAGTTGTACTTATGGGCAACAGGTTATCCCAG                         CTTCTCGATGCTTTAGAGTTGAGTAAAGAGACCATGAAGACGGTGAAGCAA
genomic: CAGCTAGTGATGTATCTTCAGTTGTACTTATGGGCAACAGGTTATCCCAGgtaatttctt ... ttcgatgcagCTTATCGATGCTTTAGAGTTGAGTAAAGAGACCATGAAGACGGTGAAGCAA
EST: gi|33094915|gb|CF054909.1|CF054909
EST:     ACTTATGGGCAACAGGTTATCCCAG                         CTTATCGATGCTTTAGAGTTGAGTAAAGAGACCATGAAGACGGTGAAGCAA
genomic: ACTTATGGGCAACAGGTTATCCCAGgtaatttctt ... ttcgatgcagCTTATCGATGCTTTAGAGTTGAGTAAAGAGACCATGAAGACGGTGAAGCAA
EST: gi|78104271|gb|DV522689.1|DV522689
EST:     CAGCTAGTGATGTATCTTCAGTTGTACTTATGGGCAACAGGTTATCCCAG                         CTTATCGATGCTTTAGAGTTGAGTAAAGAGACCATGAAGACGGTGAAGCAA
genomic: CAGCTAGTGATGTATCTTCAGTTGTACTTATGGGCAACAGGTTATCCCAGgtaatttctt ... ttcgatgcagCTTATCGATGCTTTAGAGTTGAGTAAAGAGACCATGAAGACGGTGAAGCAA
EST: gi|13249696|gb|BG360601.1|BG360601
EST:     CAGCTAGTGATGTATCTTCAGTTGTACTTATGGGCAACAGGTTATCCCAG                         CTTATCGATGCTTTAGAGTTGAGTAAAGAGTCCATGAAGACGGTGAAGCAA
genomic: CAGCTAGTGATGTATCTTCAGTTGTACTTATGGGCAACAGGTTATCCCAGgtaatttctt ... ttcgatgcagCTTATCGATGCTTTAGAGTTGAGTAAAGAGACCATGAAGACGGTGAAGCAA
EST: gi|12968157|gb|BG265104.1|BG265104
EST:     CAGCTAGTGATGTATCTTCAGTTGTACTTATGGGCAACAGGTTATCCCAG                         CTTATCGATGCTTTAGAGTTGAGTAAAGAGACCATGAAGACGGTGAAGCAA
genomic: CAGCTAGTGATGTATCTTCAGTTGTACTTATGGGCAACAGGTTATCCCAGgtaatttctt ... ttcgatgcagCTTATCGATGCTTTAGAGTTGAGTAAAGAGACCATGAAGACGGTGAAGCAA
EST: gi|12968156|gb|BG265103.1|BG265103
EST:     AGCTAGTGATGTATCTTCAGTTGTACTTATGGGCAACCAGGTTATCCCAG                         CTTATCGATGCTTTAGAGTTGAGTAAAGAGACCATGAAGACGGTGAAGCAA
genomic: AGCTAGTGATGTATCTTCAGTTGTACTTATGGGCAA-CAGGTTATCCCAGgtaatttctt ... ttcgatgcagCTTATCGATGCTTTAGAGTTGAGTAAAGAGACCATGAAGACGGTGAAGCAA
EST: gi|211170365|gb|FL103274.1|FL103274
EST:     CAGCTAGTGATGTATCTTCAGTTGTACTTATGGGCAACAGGTTATCCCAG                         CTTATCGATGCTTTAGAGTTGAGTAAAGAGACCATGAAGACGGTGAAGCAA
genomic: CAGCTAGTGATGTATCTTCAGTTGTACTTATGGGCAACAGGTTATCCCAGgtaatttctt ... ttcgatgcagCTTATCGATGCTTTAGAGTTGAGTAAAGAGACCATGAAGACGGTGAAGCAA
EST: gi|60397501|gb|DN230317.1|DN230317
EST:     CAGCTAGTGATGTATCTTCAGTTGTACTTATGGGCAACAGGTTATCCCAG                         CTTATCGATGCTTTAGAGTTGAGTAAAGAGACCATGAAGACGGTGAAGCAA
genomic: CAGCTAGTGATGTATCTTCAGTTGTACTTATGGGCAACAGGTTATCCCAGgtaatttctt ... ttcgatgcagCTTATCGATGCTTTAGAGTTGAGTAAAGAGACCATGAAGACGGTGAAGCAA
EST: gi|211170368|gb|FL103277.1|FL103277
EST:     CAGCTAGTGATGTATCTTCAGTTGTACTTATGGGCAACAGGTTATCCCAG                         CTTATCGATGCTTTAGAGTTGAGTAAAGAGACCATGAAGACGGTGAAGCAA
genomic: CAGCTAGTGATGTATCTTCAGTTGTACTTATGGGCAACAGGTTATCCCAGgtaatttctt ... ttcgatgcagCTTATCGATGCTTTAGAGTTGAGTAAAGAGACCATGAAGACGGTGAAGCAA