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CGATCACCTTGCTGCAGCATTTCTTACTTCACATAACATTGCTCATGGGGTGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAGgttagtaatagtattttttgtgttgattgaacatccattggattttcatatagttgcttgagagggactaattaattatattttgtccggctgtgttcag
species | Zea mays |
transcript | GRMZM2G134396_T02 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAG ATTGGTCTAGCAATGTCTCCCTTGAGTAACAACTCACTGTTTATCGACTATEST: gi|67028452|gb|CO457201.1|CO457201
genomic: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAG ATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTATEST: gi|21987227|gb|BQ778755.1|BQ778755
genomic: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAG ATTGGTCTAGCAATGTCTCCCTTGAGTAACAACTCACTGTTTATCGACTATEST: gi|74237693|gb|DT645607.1|DT645607
genomic: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAG ATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTATEST: gi|71299097|gb|DR785545.1|DR785545
genomic: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: CCTGTACTTCAGTACCTGTATTATCTTGCTCAG ATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTATEST: gi|149090162|gb|EE179462.2|EE179462
genomic: CCTGTACTTCAGTACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: TCAGTACCTGTATTATCTTGCTCAG ATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTATEST: gi|211424036|gb|FL301688.1|FL301688
genomic: TCAGTACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAG ATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTATEST: gi|33090962|gb|CF050956.1|CF050956
genomic: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: TACCTGTATTATCTTGCTCAG ATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTATEST: gi|71299098|gb|DR785546.1|DR785546
genomic: TACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAG ATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTATEST: gi|32931798|gb|CF036610.1|CF036610
genomic: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: ACCTGTATTATCTTGCTCAG ATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTATEST: gi|211424037|gb|FL301689.1|FL301689
genomic: ACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAG ATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTATEST: gi|211424038|gb|FL301690.1|FL301690
genomic: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAG ATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTATEST: gi|78121620|gb|DV540004.1|DV540004
genomic: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAG ATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTATEST: gi|211424039|gb|FL301691.1|FL301691
genomic: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAG ATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
genomic: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATCACCTTGCTGCAGCATTTCTTACTTCACATAACATTGCTCATGGGGTGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAGgttagtaatagtattttttgtgttgattgaacatccattggattttcatatagttgcttgagagggactaattaattatattttgtccggctgtgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA