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ATATGCTGATATATACACATCAAGGGTTTCAAATTTTCTGCACTATACTCCATTCATGTATTTCCAATCTCAAGAACAGgtaaatacacagctccatactctgcttacctttggcattttgctattgttgtgtttattggtttagattcaagaatgccaattttcttaacaatgaagac...
species | Zea mays |
transcript | GRMZM2G044819_T01 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: CAAATTTTCTGCACTATACTCCATTCATGTATTTCCAATCTCAAGAACAG ACACTTGCGGCATGATGCCCATTCCTATTCTGGAGGAAAGGACATCAAAGTEST: gi|78025583|gb|DV493970.1|DV493970
genomic: CAAATTTTCTGCACTATACTCCATTCATGTATTTCCAATCTCAAGAACAGgtaaatacac ... attgtctcagACACTTGCG-CATGATGCCCATTCCTATTCTGGAGGAAAGGACATCAAAGT
EST: CAAATTTTCTGCACTATACTCCATTCATGTATTTCCAATCTCAAGAACAG ACACTTGCGCATGATGCCCATTCCTATTCTGGAGGAAAGGACATCAAAGTTEST: gi|5713778|gb|AI943770.1|AI943770
genomic: CAAATTTTCTGCACTATACTCCATTCATGTATTTCCAATCTCAAGAACAGgtaaatacac ... attgtctcagACACTTGCGCATGATGCCCATTCCTATTCTGGAGGAAAGGACATCAAAGTT
EST: CAAATTTTCTGCACTATACTCCATTCATGTATTTCCAATCTCAAGAACAG ACACTTGCGCATGATGCCCATTCCTATTCTGGAGGAAAGGACATCAAAGTTEST: gi|211089552|gb|FL477198.1|FL477198
genomic: CAAATTTTCTGCACTATACTCCATTCATGTATTTCCAATCTCAAGAACAGgtaaatacac ... attgtctcagACACTTGCGCATGATGCCCATTCCTATTCTGGAGGAAAGGACATCAAAGTT
EST: CAAATTTTCTGCACTATACTCCATTCATGTATTTCCAATCTCAAGAACAG ACACTTGCGCATGATGCCCATTCCTATTCTGGAGGAAAGGACATCAAAGTTEST: gi|166645329|gb|EG101675.1|EG101675
genomic: CAAATTTTCTGCACTATACTCCATTCATGTATTTCCAATCTCAAGAACAGgtaaatacac ... attgtctcagACACTTGCGCATGATGCCCATTCCTATTCTGGAGGAAAGGACATCAAAGTT
EST: CAATCTCAAGAACAG ACACTTGCGCATGATGCCCATTCCTATTCTGGAGGAAAGGACATCAAAGTTEST: gi|211089553|gb|FL477199.1|FL477199
genomic: CAATCTCAAGAACAGgtaaatacac ... attgtctcagACACTTGCGCATGATGCCCATTCCTATTCTGGAGGAAAGGACATCAAAGTT
EST: CAAATTTTCTGCACTATACTCCATTCATGTATTTCCAATCTCAAGAACAG ACACTTGCGCATGATGCCCATTCCTATTCTGGAGGAAAGGACATCAAAGTTEST: gi|148967092|gb|EE018262.2|EE018262
genomic: CAAATTTTCTGCACTATACTCCATTCATGTATTTCCAATCTCAAGAACAGgtaaatacac ... attgtctcagACACTTGCGCATGATGCCCATTCCTATTCTGGAGGAAAGGACATCAAAGTT
EST: CAAATTTTCTGCACTATACTCCATTCATGTATTTCCAATCTCAAGAACAG ACACTTGCGCATGATGCCCATTCCTATTTTGGAGGAAAGGACATCAAAGTTEST: gi|5688498|gb|AI941513.1|AI941513
genomic: CAAATTTTCTGCACTATACTCCATTCATGTATTTCCAATCTCAAGAACAGgtaaatacac ... attgtctcagACACTTGCGCATGATGCCCATTCCTATTCTGGAGGAAAGGACATCAAAGTT
EST: CAAATTTTCTGCACTATACTCCATTCATGTATTTCCAATCTCAAGAACAG ACACTTGCGCATGATGCCCATTCCTATTCTGGAGGAAAGGACATCAAAGTTEST: gi|211502877|gb|FL438187.1|FL438187
genomic: CAAATTTTCTGCACTATACTCCATTCATGTATTTCCAATCTCAAGAACAGgtaaatacac ... attgtctcagACACTTGCGCATGATGCCCATTCCTATTCTGGAGGAAAGGACATCAAAGTT
EST: ACTATACTCCATTCATGTATTTCCAATCTCAAGAACAG ACACTTGCGCATGATGCCCATTCCTATTCTGGAGGAAAGGACATCAAAGTTEST: gi|12973741|gb|BG268632.1|BG268632
genomic: ACTATACTCCATTCATGTATTTCCAATCTCAAGAACAGgtaaatacac ... attgtctcagACACTTGCGCATGATGCCCATTCCTATTCTGGAGGAAAGGACATCAAAGTT
EST: CAAATTTTCTGCACTATACTCCATTCATGTATTTCCAATCTCAAGAACAG ACACTTGCGCATGATGCCCATTCCTATTCTGGAGGAAAGGACATCAAAGTTEST: gi|166487459|gb|EG163127.1|EG163127
genomic: CAAATTTTCTGCACTATACTCCATTCATGTATTTCCAATCTCAAGAACAGgtaaatacac ... attgtctcagACACTTGCGCATGATGCCCATTCCTATTCTGGAGGAAAGGACATCAAAGTT
EST: CAAATTTTCTGCACTATACTCCATTCATGTATTTCCAATCTCAAGAACAG ACACTTGACGCATGATGCCCEST: gi|16917596|gb|BM073359.1|BM073359
genomic: CAAATTTTCTGCACTATACTCCATTCATGTATTTCCAATCTCAAGAACAGgtaaatacac ... attgtctcagACACTTG-CGCATGATGCCC
EST: CAAATTTTCTGCACTATACTCCATTCATGTATTTCCAATCTCAAGAACAG ACACTTGCGCATGATGCCCATTCCTATTCTGGAGGAAAGGACATCAAAGTT
genomic: CAAATTTTCTGCACTATACTCCATTCATGTATTTCCAATCTCAAGAACAGgtaaatacac ... attgtctcagACACTTGCGCATGATGCCCATTCCTATTCTGGAGGAAAGGACATCAAAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATGCTGATATATACACATCAAGGGTTTCAAATTTTCTGCACTATACTCCATTCATGTATTTCCAATCTCAAGAACAGgtaaatacacagctccatactctgcttacctttggcattttgctattgttgtgtttattggtttagattcaagaatgccaattttcttaacaatgaagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC