1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GACGATTCTGCTGAGCCTGATTGTAATCTTGCCTCAAGGGATTCAGATGTGCCTGGAACTTTTTCTGAAGAGgttagccatctatccatcagaatgaatctgcaaagttttgatagcatttaccttacaattttttttttttgactgggacag
species | Zea mays |
transcript | GRMZM2G472991_T04 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GTAATCTTGCCTCAAGGGATTCAGATGTGCCTGGAACTTTTTCTGAAGAG AATGAAACAAGCTGTAGCAGTGAGAAGAGATTGGAAAGTCCCTCGGGTGACEST: gi|78077807|gb|DV506236.1|DV506236
genomic: GTAATCTTGCCTCAAGGGATTCAGATGTGCCTGGAACTTTTTCTGAAGAGgttagccatc ... actgggacagAATGAAACAAGCTGTAGCAGTGAGAAGAGATTGGAAAGTCCCTCGGGTGAC
EST: GTAATCTTGCCTCAAGGGATTCAGATGTGCCTGGAACTTTTTCTGAAGAG AATGAAACAAGCTGTAGCAGTGAGAAGAGATTGGAAAGTCCCTCGGGTGACEST: gi|93016529|gb|EB642049.1|EB642049
genomic: GTAATCTTGCCTCAAGGGATTCAGATGTGCCTGGAACTTTTTCTGAAGAGgttagccatc ... actgggacagAATGAAACAAGCTGTAGCAGTGAGAAGAGATTGGAAAGTCCCTCGGGTGAC
EST: GTAATCTTGCCTCAAGGGATTCAGATGTGCCTGGAACTTTTTCTGAAGAG AATGAAACAAGCTGTAGCAGTGAGAAGAGATTGGAAAGTCCCTCGGGTGACEST: gi|60337135|gb|DN204108.1|DN204108
genomic: GTAATCTTGCCTCAAGGGATTCAGATGTGCCTGGAACTTTTTCTGAAGAGgttagccatc ... actgggacagAATGAAACAAGCTGTAGCAGTGAGAAGAGATTGGAAAGTCCCTCGGGTGAC
EST: GTAATCTTGCCTCAAGGGATTCAGATGTGCCTGGAACTTTTTCTGAAGAG CATGAAACGAGTTGTAGCAGTGAGAAGAGATTGGAAAGTCCCTCGGGTGGCEST: gi|78120951|gb|DV539335.1|DV539335
genomic: GTAATCTTGCCTCAAGGGATTCAGATGTGCCTGGAACTTTTTCTGAAGAGgttagccatc ... actgggacagAATGAAACAAGCTGTAGCAGTGAGAAGAGATTGGAAAGTCCCTCGGGTGAC
EST: GTAATCTTGCCTCAAGGGATTCAGATGTGCCTGGAACTTTTTCTGAAGAG AATGAAACAAGCTGTAGCAGTGAGAAGAGATTGGAAAGTCCCTCGGGTGACEST: gi|91056419|gb|EB166837.1|EB166837
genomic: GTAATCTTGCCTCAAGGGATTCAGATGTGCCTGGAACTTTTTCTGAAGAGgttagccatc ... actgggacagAATGAAACAAGCTGTAGCAGTGAGAAGAGATTGGAAAGTCCCTCGGGTGAC
EST: GTAATCTTGCCTCAAGGGATTCAGATGTGCCTGGAACTTTTTCTGAAGAG AATGAAACAAGCTGTAGCAGTGAGAAGAGATTGGAAAGTCCCTCGGGTGACEST: gi|74246122|gb|DT654036.1|DT654036
genomic: GTAATCTTGCCTCAAGGGATTCAGATGTGCCTGGAACTTTTTCTGAAGAGgttagccatc ... actgggacagAATGAAACAAGCTGTAGCAGTGAGAAGAGATTGGAAAGTCCCTCGGGTGAC
EST: GTAATCTTGCCTCAAGGGATTCAGATGTGCCTGGAACTTTTTCTGAAGAG AATGAAACAAGCTGTAGCAGTGAGAAGAGATTGGAAAGTCCCTCGGGTGACEST: gi|78077806|gb|DV506235.1|DV506235
genomic: GTAATCTTGCCTCAAGGGATTCAGATGTGCCTGGAACTTTTTCTGAAGAGgttagccatc ... actgggacagAATGAAACAAGCTGTAGCAGTGAGAAGAGATTGGAAAGTCCCTCGGGTGAC
EST: GTAATCTTGCCTCAAGGGATTCAGATGTGCCTGGAACNNNNNNNGAAGAG AATGAAACAAGCTGTAGCAGTGAGAAGAGATTGGAAAGTCCCTCGGGTGAC
genomic: GTAATCTTGCCTCAAGGGATTCAGATGTGCCTGGAACTTTTTCTGAAGAGgttagccatc ... actgggacagAATGAAACAAGCTGTAGCAGTGAGAAGAGATTGGAAAGTCCCTCGGGTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGATTCTGCTGAGCCTGATTGTAATCTTGCCTCAAGGGATTCAGATGTGCCTGGAACTTTTTCTGAAGAGgttagccatctatccatcagaatgaatctgcaaagttttgatagcatttaccttacaattttttttttttgactgggacag
- - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA