Sequence
atgc intronic sequence ATGC exonic sequenceCTTGAATGTCGAGCAGTGTTCTATCACGTCAAGAACTGTTCAGAAGATGACAGATGCACTCCATGAAGAGTCTGTCCTTTCACATCTCTCATTAGgtacttattatcattacggcctgcttctcttgtgatttgcatagagcaatgtccaaacgttcaaaaattccgtacctttggcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G472023_T02 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os02g54280.1 (Oryza sativa), 5'ss of exon 15
-----CTTGAATGTCGAGCAGTGTTCTATCACGTCAAGAACTGTTCAGAAGATGACAGATGCACTCCATGAAGAGTCTGTCCTTTCACATCTCTCATTAGgtacttattatcattacggcctgcttctcttgtgatttgcatagagc-------aatgtccaaacgttcaaaaattccgtacctttggcag
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TACAGCTTGAATGTCGAGCAATGTTCTATCACATCAAGAACAGTTCAGAAGATGGCAGATGCACTGCATGAAGGGTCTGTCCTTTCACATCTCTCCTTAGgtactt-ttattactcctgctctgcataattgaaactatcagatatgtttcataaacattcttatgtttcaaactttcatatttttgacag
upper sequence: GRMZM2G472023_T02 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os02g54170.1 (Oryza sativa), 5'ss of exon 5
-----CTTGAATGTCGAGCAGTGTTCTATCACGTCAAGAACTGTTCAGAAGATGACAGATGCACTCCATGAAGAGTCTGTCCTTTCACATCTCTCATTAGgtacttattatcattacggc-ctgcttctcttgtgatttgcataga----------gcaatgtccaaacgttcaaaaattccgtacctttggcag
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TACAGCTTGAATGTCGAGCAATGTTCTATCACATCAAGAACAGTTCAGAAGATGGCAGATGCACTGCATGAAGGGTCTGCCCTTTCACATCTCTCCTTAGgtactt-ttattactcctgctctgcatagttaaaaactatcagatatgtttcatgtacagcattcttatgtttcaaactttcatatttttgacag
upper sequence: GRMZM2G472023_T02 (Zea mays), 5'ss of exon 14
lower sequence: Vv04s0044g00860.t01 (Vitis vinifera), 5'ss of exon 15
-----CTTGAATGTCGAGCAGTGTTCTATCACGTCAAGAACTGTTCAGAAGATGACAGATGCACTCCATGAAGAGTCTGTCCTTTCACATCTCTCATTAGgtacttattatcatt-acggcctgcttctcttgtgatttgcatagagc-----aatgtcca------aacgttcaaaaattccgtacctttggcag
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TATTACTTGAATATAGAGCGGTGTTCTATCACGTCTAGAACTGTTCAGAAGGTTGCTGATGCACTTGATTCTCAATCTGTACTTGCACAGCTTTGTTTGGgtattccggattttttattaaatatctcaataacaatattcaacaggtttcttgttatttgcttggtagggtttttaatgctcacttctttaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211497818|gb|FL217202.1|FL217202EST: GAAGAGTCTGTCCTTTCACATCTCTCATTAG GAAAGAACAACCCAATTTCTAGCAATACAATGCTTAACCTTCTATCCAAAC
genomic: GAAGAGTCTGTCCTTTCACATCTCTCATTAGgtacttatta ... cctttggcagGAAAGAACAACCCAATTTCTAGCAATACAATGCTTAACCTTCTATCCAAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTGAATGTCGAGCAGTGTTCTATCACGTCAAGAACTGTTCAGAAGATGACAGATGCACTCCATGAAGAGTCTGTCCTTTCACATCTCTCATTAGgtacttattatcattacggcctgcttctcttgtgatttgcatagagcaatgtccaaacgttcaaaaattccgtacctttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA