1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TCTGTGTGGTAGCCTCAATATTTGTGAGGCGCCATGTGTTGGAGACGAAGGGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAGgtgtgtaccatcttacattgatgaattgcacaggagttgagctgactcaaacgcaagatgcctgagaagtatgccatctgagggtttgttcggttagctc...
species | Zea mays |
transcript | GRMZM2G412899_T05 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAG GTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAAEST: gi|78119069|gb|DV537453.1|DV537453
genomic: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAGgtgtgtacca ... ctcattgcagGTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAA
EST: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAG GTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAAEST: gi|71760454|gb|DR958391.1|DR958391
genomic: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAGgtgtgtacca ... ctcattgcagGTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAA
EST: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAG GTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAAEST: gi|71321128|gb|DR797263.1|DR797263
genomic: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAGgtgtgtacca ... ctcattgcagGTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAA
EST: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCCCAATAAAG GTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAAEST: gi|78110186|gb|DV528601.1|DV528601
genomic: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAGgtgtgtacca ... ctcattgcagGTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAA
EST: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAG GTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAAEST: gi|71759302|gb|DR957239.1|DR957239
genomic: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAGgtgtgtacca ... ctcattgcagGTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAA
EST: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAG GTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAAEST: gi|148974491|gb|EE025274.2|EE025274
genomic: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAGgtgtgtacca ... ctcattgcagGTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAA
EST: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAG GTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAAEST: gi|101396769|gb|EB820310.1|EB820310
genomic: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAGgtgtgtacca ... ctcattgcagGTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAA
EST: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAG GTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAAEST: gi|211453092|gb|FL443675.1|FL443675
genomic: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAGgtgtgtacca ... ctcattgcagGTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAA
EST: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCMCAATAAAG GTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAAEST: gi|76015719|gb|DT942889.1|DT942889
genomic: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAGgtgtgtacca ... ctcattgcagGTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAA
EST: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAG GTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAAEST: gi|211329247|gb|FL462804.1|FL462804
genomic: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAGgtgtgtacca ... ctcattgcagGTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAA
EST: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAG GTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAAEST: gi|50326105|gb|CO521231.1|CO521231
genomic: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAGgtgtgtacca ... ctcattgcagGTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAA
EST: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAG GTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAAEST: gi|74240465|gb|DT648379.1|DT648379
genomic: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAGgtgtgtacca ... ctcattgcagGTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAA
EST: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAG GTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAA
genomic: GGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAGgtgtgtacca ... ctcattgcagGTACATATTTGACGTGGCTGGAACCTTGGGCAGGCTGTTTGCTGAACAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGTGTGGTAGCCTCAATATTTGTGAGGCGCCATGTGTTGGAGACGAAGGGAAAGACTTTACAAGAGATAGAGGTTTCACTCCTGCAACCACAATAAAGgtgtgtaccatcttacattgatgaattgcacaggagttgagctgactcaaacgcaagatgcctgagaagtatgccatctgagggtttgttcggttagctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA