1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTAAGCGCGAGCAGCACTTTTGGAGATTACCATCGAATTGTTGCGCCTGGTGAGACATATGAAGgtaaatccttttcattactttattgtctttgtctcatatgcaacacatcatttgtatatatggttatatcacctgcagttaacagaagagagtagtaaacctaagaccggcatgtctgttcactttacataacgacatttctgcccgtgattcggctgcag
species | Zea mays |
transcript | GRMZM2G106683_T02 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CACTTTTGGAGATTACCATCGAATTGTTGCGCCTGGTGAGACATATGAAG TGGTGGCATCGATGCGAGGCTTCCGGCAAAAATCTACACGCATCAGGCTGGEST: gi|166620010|gb|EG153163.1|EG153163
genomic: CACTTTTGGAGATTACCATCGAATTGTTGCGCCTGGTGAGACATATGAAGgtaaatcctt ... tcggctgcagTGGTGGCATCGATGCGAGGCTTCCGGCAAAAATCTACACGCATCAGGCTGG
EST: CACTTTTGGAGATTACCATCGAATTGTTGCGCCTGGTGAGACATATGAAG TGGTGGCATCGATGCGAGGCTTCCGGCAAAAATCTACACGEST: gi|78024095|gb|DV492482.1|DV492482
genomic: CACTTTTGGAGATTACCATCGAATTGTTGCGCCTGGTGAGACATATGAAGgtaaatcctt ... tcggctgcagTGGTGGCATCGATGCGAGGCTTCCGGCAAAAATCTACACG
EST: CACTTTCGGAGATTACCATCGAATTGTTGCGCCTGGTGAGACATATGAAG TCGTGGCATCGATGCGAGGCTTCCGGCAAAAATCTACACGCATCAGGCTGGEST: gi|5081117|gb|AI738163.1|AI738163
genomic: CACTTTTGGAGATTACCATCGAATTGTTGCGCCTGGTGAGACATATGAAGgtaaatcctt ... tcggctgcagTGGTGGCATCGATGCGAGGCTTCCGGCAAAAATCTACACGCATCAGGCTGG
EST: CACTTTCGGAGATTACCATCGAATTGTTGCGCCTGGTGAGACATATGAAG TCGTGGCATCGATGCGAGGCTTCCGGCAAAAATCTACACGCATCAGGCTGGEST: gi|78110109|gb|DV528524.1|DV528524
genomic: CACTTTTGGAGATTACCATCGAATTGTTGCGCCTGGTGAGACATATGAAGgtaaatcctt ... tcggctgcagTGGTGGCATCGATGCGAGGCTTCCGGCAAAAATCTACACGCATCAGGCTGG
EST: CACTTTTGGAGATTACCATCGAATTGTTGCGCCTGGTGAGACATATGAAG TGGTGGCATCGATGCGAGGCTTCCGGCAAAAATCTACACGCATCAGGCTGG
genomic: CACTTTTGGAGATTACCATCGAATTGTTGCGCCTGGTGAGACATATGAAGgtaaatcctt ... tcggctgcagTGGTGGCATCGATGCGAGGCTTCCGGCAAAAATCTACACGCATCAGGCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAAGCGCGAGCAGCACTTTTGGAGATTACCATCGAATTGTTGCGCCTGGTGAGACATATGAAGgtaaatccttttcattactttattgtctttgtctcatatgcaacacatcatttgtatatatggttatatcacctgcagttaacagaagagagtagtaaacctaagaccggcatgtctgttcactttacataacgacatttctgcccgtgattcggctgcag
- - - - - - - - - TTGGAG
- - - - - - - - - - TGGAGA
- - - - - - - - - - GGAGAT