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GTCAGTGAGTGCCTAGGGACTTTGATTAAAACCTTCAAAGGTTCTTTCTTGCCGTTTTTTGAAGAGCTCTCTATGTACATTACACCAATGTTGgtaagtcaatagaaccctgccctattttgttttttgtaagagcttttttgttgtaagtaattttgcagttgttgcattctgatatttagtttacatgttt...
species | Zea mays |
transcript | GRMZM5G887631_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CTTTCTTGCCGTTTTTTGAAGAGCTCTCTATGTACATTACACCAATGTTG GGAAAAGATAAAACACCTGAAGAGAGAAGGATAGCTATCTGTATTTTTGATEST: gi|32944044|gb|CF048863.1|CF048863
genomic: CTTTCTTGCCGTTTTTTGAAGAGCTCTCTATGTACATTACACCAATGTTGgtaagtcaat ... ttatttgcagGGAAAAGATAAAACACCTGAAGAGAGAAGGATAGCTATCTGTATTTTTGAT
EST: GTACATTACACCAATGTTG GGAAAAGATAAAACACCTGAAGAGAGAAGGATAGCTATCTGTATTTTTGATEST: gi|33094008|gb|CF054002.1|CF054002
genomic: GTACATTACACCAATGTTGgtaagtcaat ... ttatttgcagGGAAAAGATAAAACACCTGAAGAGAGAAGGATAGCTATCTGTATTTTTGAT
EST: ACATTACACCAATGTTG GGAAAAGATAAAACACCTGAAGAGAGAAGGATAGCTATCTGTATTTTTGATEST: gi|211217762|gb|FL412345.1|FL412345
genomic: ACATTACACCAATGTTGgtaagtcaat ... ttatttgcagGGAAAAGATAAAACACCTGAAGAGAGAAGGATAGCTATCTGTATTTTTGAT
EST: CTTTCTTGCCGTTTTTTGAAGAGCTCTCTATGTACATTACACCAATGTTG GGAAAAGATAAAACACCTGAAGAGAGAAGGATAGCTATCTGTAEST: gi|33091899|gb|CF051893.1|CF051893
genomic: CTTTCTTGCCGTTTTTTGAAGAGCTCTCTATGTACATTACACCAATGTTGgtaagtcaat ... ttatttgcagGGAAAAGATAAAACACCTGAAGAGAGAAGGATAGCTATCTGTA
EST: ACATTACACCAATGTTG GGAAAAGATAAAACACCTGAAGAGAGAAGGATAGCTATCTGTATTTTTGATEST: gi|32937992|gb|CF042811.1|CF042811
genomic: ACATTACACCAATGTTGgtaagtcaat ... ttatttgcagGGAAAAGATAAAACACCTGAAGAGAGAAGGATAGCTATCTGTATTTTTGAT
EST: CTTTCTTGCCGTTTTTTGAAGAGCTCTCTATGTACATTACACCAATGTTG GGAAAAGATAAAACACCTGAAGAGAGAAGGATAGCTATCTGTATTTTTGAT
genomic: CTTTCTTGCCGTTTTTTGAAGAGCTCTCTATGTACATTACACCAATGTTGgtaagtcaat ... ttatttgcagGGAAAAGATAAAACACCTGAAGAGAGAAGGATAGCTATCTGTATTTTTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAGTGAGTGCCTAGGGACTTTGATTAAAACCTTCAAAGGTTCTTTCTTGCCGTTTTTTGAAGAGCTCTCTATGTACATTACACCAATGTTGgtaagtcaatagaaccctgccctattttgttttttgtaagagcttttttgttgtaagtaattttgcagttgttgcattctgatatttagtttacatgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctgcc