Sequence
atgc intronic sequence ATGC exonic sequenceACTGCACAAGATAATATTGATCTACAGACCACCATTCTTTCTAGATTTGATCAAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAGgtatgaagcaaaaaatatttctacagattttctattctagctgcctcggagactaattgcaacatcaaaatacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G450055_T01 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os02g55410.2 (Oryza sativa), 5'ss of exon 13
ACTGCACAAGATAATATTGATCTACAGACCACCATTCTTTCTAGATTTGATCAAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAGgtatgaagcaaaaaatatttctacagattttctattctagctgcctcggagactaattgcaacatcaaaatacag
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ACTGCACAAGATAACATTGATCTGCAGACAACCATCCTTTCTAGATTTGATCTAATCTTTATTGTTAAAGATGTCAGAATGTATGATCAAGACAAGgtatgacgcattat-tctttgtccagctcattgatg-----tgcttcagagactaaata-aacttccaattgcag
upper sequence: GRMZM2G450055_T01 (Zea mays), 5'ss of exon 13
lower sequence: AT2G07690.2 (Arabidopsis thaliana), 5'ss of exon 12
ACTGCACAAGATAATATTGATCTACAGACCACCATTCTTTCTAGATTTGATCAAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAGgtatg-aagcaaaaaat--atttctacagattttctattctagctgcctcggagactaattgcaacatcaaaatacag-----------------------------------------------------------------------
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ACTGCTCAGGACAATATCGATCTGCAGACAACAATTCTTTCTAGATTTGATCTTATCTTCATTGTCAAGGACATCAGGAAGTATTCCCAAGACAAGgtaagcaaggaaaggaacaattctttcagaaattttatgtagttaaaagggaaaacagagattaatgatggaggtcactgttattggaaagtttgcttcgttgcttgcttattatgtagacatgattaatgtttataatcttttcacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211539706|gb|FK958374.1|FK958374EST: TTGATCTAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAG CGAATAGCAAG
genomic: TTGATCAAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAGgtatgaagca ... caaaatacagCGAATAGCAAG
EST:
gi|22490113|gb|BU050036.1|BU050036EST: TTGATCTAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAG CGAATAGCAAGCCACATTATCAAGGTGCATGCCAGTGGTGCAGCAGCGTCA
genomic: TTGATCAAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAGgtatgaagca ... caaaatacagCGAATAGCAAGCCACATTATCAAGGTGCATGCCAGTGGTGCAGCAGCGTCA
EST:
gi|22473134|gb|BU037614.1|BU037614EST: TTGATCTAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAG CGAATAGCAAGCCACATTATCAAGGTGCATGCCAGTGGTGCAGCAGCGTCA
genomic: TTGATCAAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAGgtatgaagca ... caaaatacagCGAATAGCAAGCCACATTATCAAGGTGCATGCCAGTGGTGCAGCAGCGTCA
EST:
gi|21760083|gb|BQ635624.1|BQ635624EST: TTGATCTAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAG CGAATAGCAAGCCACATTATCAAGGTGCATGCCAGCGGTGCAGCAGCGTCA
genomic: TTGATCAAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAGgtatgaagca ... caaaatacagCGAATAGCAAGCCACATTATCAAGGTGCATGCCAGTGGTGCAGCAGCGTCA
EST:
gi|211542715|gb|FK958382.1|FK958382EST: TTGATCTAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAG CGAATAGCAAG
genomic: TTGATCAAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAGgtatgaagca ... caaaatacagCGAATAGCAAG
EST:
gi|22545894|gb|BU098253.1|BU098253EST: TTGATCTAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAG CGAATAGCAAGCCACATTATCAAGGTGCATGCCAGTGGTGCAGCAGCGTCA
genomic: TTGATCAAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAGgtatgaagca ... caaaatacagCGAATAGCAAGCCACATTATCAAGGTGCATGCCAGTGGTGCAGCAGCGTCA
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
48 (upstream exon),
49 (downstream exon)
Score:
178ACTGCACAAGATAATATTGATCTACAGACCACCATTCTTTCTAGATTTGATCAAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAGgtatgaagca ... caaaatacagCGAATAGCAAGCCACATTATCAAGGTGCATGCCAGTGGTGCAGCAGCGTCATCCGCAAACACAGAGGGAAGTGAAGGAGAGAATTGGCTTAAAAG
Block sizes:
48 (upstream exon),
49 (downstream exon)
Score:
35ACTGCACAAGATAATATTGATCTACAGACCACCATTCTTTCTAGATTTGATCAAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAGgtatgaagca ... caaaatacagCGAATAGCAAGCCACATTATCAAGGTGCATGCCAGTGGTGCAGCAGCGTCATCCGCAAACACAGAGGGAAGTGAAGGAGAGAATTGGCTTAAAAG
Block sizes:
45 (upstream exon),
49 (downstream exon)
Score:
42ACTGCACAAGATAATATTGATCTACAGACCACCATTCTTTCTAGATTTGATCAAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAGgtatgaagca ... caaaatacagCGAATAGCAAGCCACATTATCAAGGTGCATGCCAGTGGTGCAGCAGCGTCATCCGCAAACACAGAGGGAAGTGAAGGAGAGAATTGGCTTAAAAG
Block sizes:
46 (upstream exon),
45 (downstream exon)
Score:
12ACTGCACAAGATAATATTGATCTACAGACCACCATTCTTTCTAGATTTGATCAAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAGgtatgaagca ... caaaatacagCGAATAGCAAGCCACATTATCAAGGTGCATGCCAGTGGTGCAGCAGCGTCATCCGCAAACACAGAGGGAAGTGAAGGAGAGAATTGGCTTAAAAG