1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GAAGTCAGGGCAGAAAGACATCTTCTACATCACGGGAAGCAGCAAAGAGCAGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAGgtattttatgctgctggtggtttatccacttccattatagtgtctgagatctggaatacagcttgtgggaagtaacgctgtcgcttgatttttttgtttgtgcag
species | Zea mays |
transcript | GRMZM2G141931_T02 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAG GTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTACCTGATGEST: gi|7216906|gb|AW563028.1|AW563028
genomic: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAGgtattttatg ... gtttgtgcagGTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTACCTGATG
EST: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAG GTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTACCTGATGEST: gi|211114829|gb|FL096555.1|FL096555
genomic: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAGgtattttatg ... gtttgtgcagGTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTACCTGATG
EST: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAG GTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTACCTGATGEST: gi|32839095|gb|CD978776.1|CD978776
genomic: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAGgtattttatg ... gtttgtgcagGTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTACCTGATG
EST: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAG GTCATCTTCTTCACCGACCCCGTGGACGAGTEST: gi|14883462|gb|BI273359.1|BI273359
genomic: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAGgtattttatg ... gtttgtgcagGTCATCTTCTTCACCGACCCCGTGGACGAGT
EST: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAG GTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTACCTTATGEST: gi|67040044|gb|CO466299.1|CO466299
genomic: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAGgtattttatg ... gtttgtgcagGTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTACCTGATG
EST: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAG GTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTACCTGATGEST: gi|31354312|gb|CD438669.1|CD438669
genomic: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAGgtattttatg ... gtttgtgcagGTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTACCTGATG
EST: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAG GTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTACCTGATGEST: gi|67017884|gb|CO446633.1|CO446633
genomic: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAGgtattttatg ... gtttgtgcagGTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTACCTGATG
EST: AGCTGGAGAAGTCTNCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAG GTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTACCTGATGEST: gi|50339539|gb|CO534665.1|CO534665
genomic: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAGgtattttatg ... gtttgtgcagGTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTACCTGATG
EST: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAG GTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTACCTGATGEST: gi|211114828|gb|FL096554.1|FL096554
genomic: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAGgtattttatg ... gtttgtgcagGTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTACCTGATG
EST: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAG GTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTACCTGATGEST: gi|31356123|gb|CD440480.1|CD440480
genomic: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAGgtattttatg ... gtttgtgcagGTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTACCTGATG
EST: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAG GTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTACCTGATGEST: gi|20208078|gb|BQ134167.1|BQ134167
genomic: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAGgtattttatg ... gtttgtgcagGTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTACCTGATG
EST: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAG GTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTACCTGATGEST: gi|26456287|gb|CA827870.1|CA827870
genomic: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAGgtattttatg ... gtttgtgcagGTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTACCTGATG
EST: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAG GTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTEST: gi|67024193|gb|CO452942.1|CO452942
genomic: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAGgtattttatg ... gtttgtgcagGTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGT
EST: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAG GTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTACCTGATG
genomic: AGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAGgtattttatg ... gtttgtgcagGTCATCTTCTTCACCGACCCCGTGGACGAGTACCTGATGCAGTACCTGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGTCAGGGCAGAAAGACATCTTCTACATCACGGGAAGCAGCAAAGAGCAGCTGGAGAAGTCTCCATTCCTCGAGAGGCTAACCAAGAAGAACTACGAGgtattttatgctgctggtggtttatccacttccattatagtgtctgagatctggaatacagcttgtgggaagtaacgctgtcgcttgatttttttgtttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC