1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
AGAACTACAATTTATGCTCAAGTCGATGCTGCTCTTCGCAAAATAAGAGACACATCAGAGgtcctacatgcaattcagcctacttttattcacttatttcctcaaatgcacagaaagtataactactatctctggtctggtgcag
species | Zea mays |
transcript | GRMZM2G135968_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TTTATGCTCAAGTCGATGCTGCTCTTCGCAAAATAAGAGACACATCAGAG TTTGTCCAATCTTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACTTEST: gi|211224340|gb|FL202741.1|FL202741
genomic: TTTATGCTCAAGTCGATGCTGCTCTTCGCAAAATAAGAGACACATCAGAGgtcctacatg ... tctggtgcagTTTGTCCAATCTTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACTT
EST: TTTATGCTCAAGTCTATGCTGCTCTTCGCAAAATAAGAGACACATCAGAG TTTGTCCAATCTTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACTTEST: gi|60343412|gb|DN210385.1|DN210385
genomic: TTTATGCTCAAGTCGATGCTGCTCTTCGCAAAATAAGAGACACATCAGAGgtcctacatg ... tctggtgcagTTTGTCCAATCTTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACTT
EST: AAGAGACACATCAGAG TTTGTCCAATCTTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACTTEST: gi|60398231|gb|DN231047.1|DN231047
genomic: AAGAGACACATCAGAGgtcctacatg ... tctggtgcagTTTGTCCAATCTTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACTT
EST: TTTATGCTCAAGTCGATGCTGCTCTTCGCAAAATAAGAGACACATCAGAG TTTGTCCAATCTTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACTTEST: gi|60397588|gb|DN230404.1|DN230404
genomic: TTTATGCTCAAGTCGATGCTGCTCTTCGCAAAATAAGAGACACATCAGAGgtcctacatg ... tctggtgcagTTTGTCCAATCTTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACTT
EST: GCAAAATAAGAGACACATCAGAG TTTGTCCAATCTTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACTTEST: gi|31357399|gb|CD441756.1|CD441756
genomic: GCAAAATAAGAGACACATCAGAGgtcctacatg ... tctggtgcagTTTGTCCAATCTTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACTT
EST: TTTATGCTCAAGTCGATGCTGCTCTTCGCAAAATAAGAGACACATCAGAG TTTGTCCAATCTTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACTT
genomic: TTTATGCTCAAGTCGATGCTGCTCTTCGCAAAATAAGAGACACATCAGAGgtcctacatg ... tctggtgcagTTTGTCCAATCTTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAACTACAATTTATGCTCAAGTCGATGCTGCTCTTCGCAAAATAAGAGACACATCAGAGgtcctacatgcaattcagcctacttttattcacttatttcctcaaatgcacagaaagtataactactatctctggtctggtgcag
- - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - AAGAGA