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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTGAAATTGGTGGAGCATTTGGTGGAGAAAAAGCAACTGGTGGTGGACGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtatacacatttttgctgtgattgcatttgaaatggtactatatataatcattattagagcagtgcatagtaagggtagttgcataatttgata...

Basic information

species Zea mays
transcript GRMZM2G130440_T02
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130440_T02 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os09g26880.3 (Oryza sativa), 5'ss of exon 13
GTGCTGAAATTGGTGGAGCATTTGGTGGAGAAAAAGCAACTGGTGGTGGACGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtatacacatttttgctgtgat-tgcatttgaaatggt-actatatataatcattattagagcagtgcatagtaagggtagttgcataatttgata-
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||  || ||| |||||   |    | ||||    | |   | |  |  |   |  |||  |||  |  |    | |      |  |   |  ||||  | 
GTGCTGAAATTGGTGGAGCTTTTGGTGGAGAAAAAGCTACTGGTGGTGGACGAGAAGCAGGGAGTGATTCGTGGAAGCAGTACATGAGGAGGGCCACTTGgtaag--tagacaaattttgattcaagtatgcaagctataccttgatcaattggtaaaattcctagttccttttgcacttttcccaagt-tgtcgtttgcaac

upper sequence: GRMZM2G130440_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA15G19670.1 (Glycine max), 5'ss of exon 13
GTGCTGAAATTGGTGGAGCATTTGGTGGAGAAAAAGCAACTGGTGGTGGACGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtatacacatttttgctgtgattgcatttga--aatggtactatatataatcattattagagcagtgcatagtaagggtagttgcataatttgata
| ||||| |||||||| || |||||||||||||| || || |||||||| || || || || ||||| || |||||||| |||||| || |  | || |||||||  |      |||| || |||        |||   |   || ||||  || | |||||| |  || || | | | |                      
GAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGCCGTGAGGCGGGAAGTGACTCGTGGAAGCAATACATGCGGCGTTCTACATGgtaagtcttgttgaatttatgatgtttcatttcttggttataagttctattaatga-cattataattgctgtccttggcag---------------------

upper sequence: GRMZM2G130440_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA09G08150.1 (Glycine max), 5'ss of exon 13
GTGCTGAAATTGGTGGAGCATTTGGTGGAGAAAAAGCAACTGGTGGTGGACGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaag-----agtatacacatttttgctg-------tgattgca---tttga-aatggt-actatatataatcattatta--gagca-gtgcatagtaagg--gtagttgcataatttgata-
| |||||||||||||| || |||||||||||||| || || |||||||| || ||||| || ||||| || |||||||| |||||| || |  | || |||||||       |  |   ||  ||| |        || ||  |   | ||  |||||| | ||||| | |  ||| ||   | ||| |  | || | |     || ||||     |||  | 
GAGCTGAAATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACAGGTGGTGGCCGTGAAGCGGGAAGTGACTCATGGAAGCAATACATGCGGCGTTCTACATGgtaagtcttcgttgaatttatgattgttacattccttggttataagctctgttaatggtgaatatatcttaatattttttctgtgcatgctcgtaatgacattataattgctgttcttggcag

upper sequence: GRMZM2G130440_T02 (Zea mays), 5'ss of exon 13
lower sequence: AT1G54100.2 (Arabidopsis thaliana), 5'ss of exon 13
GTGCTGAAATTGGTGGAGCATTTGGTGGAGAAAAAGCAACTGGTGGTGGACGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtatacacatttttgctgtgattgcatttgaaatggtactatatataatcattattagagcagtgcatagtaagggtagttgcataatttgata-
| ||||| ||||||||||| ||||| || || ||||| ||||||||||| || ||||| || || || || ||||| ||||||||| |  |  ||||||||||| | | |  |  || |  || |  || |||   || |     | ||  |  |   |||| ||    |  ||        | | |  ||  ||||| | 
GAGCTGAGATTGGTGGAGCTTTTGGAGGCGAGAAAGCGACTGGTGGTGGTCGTGAAGCTGGAAGCGACTCATGGAAACAGTACATGCGTCGATCGACTTGgtaacaatcttaagcttctctctctcttttcat---aatttccggtttaagtttttgatatttgattctttaat--------tcggtttatcttttgacag

upper sequence: GRMZM2G130440_T02 (Zea mays), 5'ss of exon 13
lower sequence: Vv11s0016g00900.t01 (Vitis vinifera), 5'ss of exon 13
GTGCTGAAATTGGTGGAGCATTTGGTGGAGAAAAAGCAACTGGTGGTGGACGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaag--agtatacacattt----ttgctgtgattgcat--ttgaaatggtacta-tatataatcattattagagcagtgcatag---taagggtagttgcataatttgata-----------
| ||||| ||||||||||| ||||| |||||||| |||||||||||||| || |||||||| || || |||||||| || |||||| || |  | || ||||||    || ||  | |||    ||| || |  || ||  ||   ||  | | | ||| | ||||||||    ||| |   | |   | |    ||    |||||| | |            
GAGCTGAGATTGGTGGAGCTTTTGGGGGAGAAAAGGCAACTGGTGGTGGTCGTGAAGCAGGAAGCGACTCCTGGAAACAATACATGCGGCGTTCAACATGgtaatttggtttaaccgtttgattttgttgcgggtgtatgtttcttatatttcgagtattttatcattat-gttgcattttttggatttgacaaaagacctataatt-gttgtccttccacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67020548|gb|CO449297.1|CO449297
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|60347398|gb|DN214371.1|DN214371
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|9255155|gb|BE345623.1|BE345623
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAATACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|33097600|gb|CF057560.1|CF057560
EST:     GCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: GCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|16377835|gb|BI992138.1|BI992138
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACATATAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|5650136|gb|AI920496.1|AI920496
EST:     GAGAAGCAGGNGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGG
genomic: GAGAAGCAGG-GAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGG
EST: gi|14204228|gb|BG837905.1|BG837905
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|67026257|gb|CO455006.1|CO455006
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|33104170|gb|CF064130.1|CF064130
EST:     ACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: ACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|32915097|gb|CF019909.1|CF019909
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|37383638|gb|CF628842.1|CF628842
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|32936004|gb|CF040816.1|CF040816
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|32857950|gb|CD997631.1|CD997631
EST:     GAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: GAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|32868260|gb|CF007942.1|CF007942
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|6828017|gb|AW331660.1|AW331660
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|4647186|gb|AI622261.1|AI622261
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|60350203|gb|DN217176.1|DN217176
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|166605741|gb|EG198428.1|EG198428
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|149059482|gb|EE156966.2|EE156966
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGGGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|211261857|gb|FL408778.1|FL408778
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|148962666|gb|EE013565.2|EE013565
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGGGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTTTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|78081605|gb|DV510017.1|DV510017
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|67016733|gb|CO445482.1|CO445482
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|32868259|gb|CF007941.1|CF007941
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|211229233|gb|FL464290.1|FL464290
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|7844212|gb|AW787434.1|AW787434
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|5770354|gb|AI973528.1|AI973528
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|60354799|gb|DN221772.1|DN221772
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|88748631|gb|DY532772.1|DY532772
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|211191322|gb|FL465412.1|FL465412
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|148935116|gb|EC879156.2|EC879156
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|60350447|gb|DN217420.1|DN217420
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|71767768|gb|DR965705.1|DR965705
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|33096472|gb|CF056466.1|CF056466
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|5608384|gb|AI901961.1|AI901961
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAATACATGAGGAGGGCGACTTG                         TNCAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|61236938|gb|DN586642.1|DN586642
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|149110788|gb|EE294304.2|EE294304
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|32857077|gb|CD996758.1|CD996758
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|67034827|gb|CO463360.1|CO463360
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|211149006|gb|FL413135.1|FL413135
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|213173989|gb|FM188890.1|FM188890
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|7844210|gb|AW787432.1|AW787432
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|149021322|gb|EE154443.2|EE154443
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|7844211|gb|AW787433.1|AW787433
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|60346376|gb|DN213349.1|DN213349
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|67026004|gb|CO454753.1|CO454753
EST:     GAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGCAGG-CGACTTG                         TACATTCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAA
genomic: GAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGG-AGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAA
EST: gi|211441965|gb|FL416336.1|FL416336
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|149076635|gb|EE165274.2|EE165274
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|6056852|gb|AW091257.1|AW091257
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|110528718|gb|EE032902.1|EE032902
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGGGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|37396775|gb|CF635681.1|CF635681
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|148982783|gb|EE028612.2|EE028612
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|61118846|gb|DN559807.1|DN559807
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|148935241|gb|EC879278.2|EC879278
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|149097408|gb|EE183262.2|EE183262
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGGGACTTG                         TCCAATCAACTATGGGAGCGAGCTACCTTTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|111193977|gb|EE292113.1|EE292113
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGGGACTTG                         TACAATCAACTATGGGAGGGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
EST: gi|149008574|gb|EE040752.2|EE040752
EST:     CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTG                         TACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG
genomic: CGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtat ... acatttgcagTACAATCAACTATGGGAGCGAGCTACCTCTAGCCCAGGGAATCAATTTTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGCTGAAATTGGTGGAGCATTTGGTGGAGAAAAAGCAACTGGTGGTGGACGAGAAGCAGGGAGTGATTCCTGGAAGCAGTACATGAGGAGGGCGACTTGgtaagagtatacacatttttgctgtgattgcatttgaaatggtactatatataatcattattagagcagtgcatagtaagggtagttgcataatttgata

- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG