1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TATGAAGATGATGAAGGTGACCGAGTGCTGCTGACAACAGATGCCGATCTTGCTGGTGCACTGCTGCATGCCAAATCATCTGGGTTGAAGgtaactcttttcctcgccttctgtgattatctatttcatgtacaggttgtagggctacgaattacttgctcaatccacctgagaaacaaatgtttaccgtcag
species | Zea mays |
transcript | GRMZM2G126656_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TGCTGCATGCCAAATCATCTGGGTTGAAG GTGCTGAAGTTGCACATCGAAGACCTTAGTTTGAACACTGAAGTGACAAANEST: gi|78086693|gb|DV515086.1|DV515086
genomic: TGCTGCATGCCAAATCATCTGGGTTGAAGgtaactcttt ... ttaccgtcagGTGCTGAAGTTGCACATCGAAGACCCTAGTTTGAACACTGAAGTGACAAAA
EST: ATGCCGATCTTGCTGGTGCACTGCTGCATGCCAAATCATCTGGGTTGAAG GTGCTGAAGTTGCACATCGAAGACCCTAGTTTGAACACTGAAGTGACAAAAEST: gi|14243709|gb|BG841442.2|BG841442
genomic: ATGCCGATCTTGCTGGTGCACTGCTGCATGCCAAATCATCTGGGTTGAAGgtaactcttt ... ttaccgtcagGTGCTGAAGTTGCACATCGAAGACCCTAGTTTGAACACTGAAGTGACAAAA
EST: ATGCCGATCTTGCTGGTGCACTGCTGCATGCCAAATCATCTGGGTTGAAG GTGCTGAAGTTGCACATCGAAGACCCTAGTTTGAACACTGAAGTGACAAAAEST: gi|78078046|gb|DV506461.1|DV506461
genomic: ATGCCGATCTTGCTGGTGCACTGCTGCATGCCAAATCATCTGGGTTGAAGgtaactcttt ... ttaccgtcagGTGCTGAAGTTGCACATCGAAGACCCTAGTTTGAACACTGAAGTGACAAAA
EST: ATGCCGATCTTGCTGGTGCACTGCTGCATGCCAAATCATCTGGGTTGAAG GTGCTGAAGTTGCACATCGAAGACCCTAGTTTGAACACTGAAGTGACAAAAEST: gi|67021865|gb|CO450614.1|CO450614
genomic: ATGCCGATCTTGCTGGTGCACTGCTGCATGCCAAATCATCTGGGTTGAAGgtaactcttt ... ttaccgtcagGTGCTGAAGTTGCACATCGAAGACCCTAGTTTGAACACTGAAGTGACAAAA
EST: ATGCCGATCTTGCTGGTGCACTGCTGCATGCCAAATCATCTGGGTTGAAG GTGCTGAAGTTGCACATCGAAGACCCTAGTTTGAACACTGAAGTGACAAAAEST: gi|71764855|gb|DR962792.1|DR962792
genomic: ATGCCGATCTTGCTGGTGCACTGCTGCATGCCAAATCATCTGGGTTGAAGgtaactcttt ... ttaccgtcagGTGCTGAAGTTGCACATCGAAGACCCTAGTTTGAACACTGAAGTGACAAAA
EST: ATGCCGATCTTGCTGGTGCACTGCTGCATGCCAAATCATCTGGGTTGAAG GTGCTGAAGTTGCACATCGAAGACCCTAGTTTGAACACTGAAGTGACAAAAEST: gi|88752524|gb|DY536665.1|DY536665
genomic: ATGCCGATCTTGCTGGTGCACTGCTGCATGCCAAATCATCTGGGTTGAAGgtaactcttt ... ttaccgtcagGTGCTGAAGTTGCACATCGAAGACCCTAGTTTGAACACTGAAGTGACAAAA
EST: CCGATCTTGCTGGTGCACTGCTGCATGCCAAATCATTTGGGTTGAAG GTGCTGAAGTTGCACATCGAAGACCCTAGTTTGAACACTGAAGTGACAAAAEST: gi|148949418|gb|EC894877.2|EC894877
genomic: CCGATCTTGCTGGTGCACTGCTGCATGCCAAATCATCTGGGTTGAAGgtaactcttt ... ttaccgtcagGTGCTGAAGTTGCACATCGAAGACCCTAGTTTGAACACTGAAGTGACAAAA
EST: ATGCCGATCTTGCTGGTGCACTGCTGCATGCCAAATCATCTGGGTTGAAG GTGCTGAAGTTGCACATCGAAGACCCTAGTTTGAACACTGAAGTGACAAAA
genomic: ATGCCGATCTTGCTGGTGCACTGCTGCATGCCAAATCATCTGGGTTGAAGgtaactcttt ... ttaccgtcagGTGCTGAAGTTGCACATCGAAGACCCTAGTTTGAACACTGAAGTGACAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGAAGATGATGAAGGTGACCGAGTGCTGCTGACAACAGATGCCGATCTTGCTGGTGCACTGCTGCATGCCAAATCATCTGGGTTGAAGgtaactcttttcctcgccttctgtgattatctatttcatgtacaggttgtagggctacgaattacttgctcaatccacctgagaaacaaatgtttaccgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG