1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
AGCTACATGGCATTAAAGTTTCAGTAAATGACATCATCATAAAGGCTGTGGCAATTGCGTTGCGGAACGTCCCTGAAGCAAATGgtaatttcaaaataacaaaacaaacatcaaattccaaagtttttttaggcatggaactagaattgttcaattacttatttgtcagatgcacgagtcacaa...
species | Zea mays |
transcript | GRMZM2G082664_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CATCATAAAGGCTGTGGCAATTGCGTTGCGGAACGTCCCTGAAGCAAATG CTTACTGGAACAATGATAAGGAAGAAACTCAAAAGTGCGATTCAGTTGATAEST: gi|60347222|gb|DN214195.1|DN214195
genomic: CATCATAAAGGCTGTGGCAATTGCGTTGCGGAACGTCCCTGAAGCAAATGgtaatttcaa ... ctattgccagCTTACTGGAACAATGATAAGGAAGAAACTCAAAAGTGCGATTCAGTTGATA
EST: CATCATAAAGGCTGTGGCAATTGCCTTGCGGAACGTCCCTGAAGCAAATG CTTACTGGAACAATGATAAGGAAGAAACCCAAAAGTGTGATTCAGTTGATAEST: gi|50331519|gb|CO526645.1|CO526645
genomic: CATCATAAAGGCTGTGGCAATTGCGTTGCGGAACGTCCCTGAAGCAAATGgtaatttcaa ... ctattgccagCTTACTGGAACAATGATAAGGAAGAAACTCAAAAGTGCGATTCAGTTGATA
EST: CATCATAAAGGCTGTGGCAATTGCGTTGCGGAACGTCCCTGAAGCAAATG CTTACTGGAACAATGATAAGGAAGAAACTCAAAAGTGCGATTCAGTTGATAEST: gi|37398003|gb|CF636310.1|CF636310
genomic: CATCATAAAGGCTGTGGCAATTGCGTTGCGGAACGTCCCTGAAGCAAATGgtaatttcaa ... ctattgccagCTTACTGGAACAATGATAAGGAAGAAACTCAAAAGTGCGATTCAGTTGATA
EST: TCCCTGAAGCAAATG CTTACTGGTACAATGATAAGGAAGAAACTCAAAAGTGCGATTCAGTTGATAEST: gi|40337298|gb|CK371368.1|CK371368
genomic: TCCCTGAAGCAAATGgtaatttcaa ... ctattgccagCTTACTGGAACAATGATAAGGAAGAAACTCAAAAGTGCGATTCAGTTGATA
EST: GCGTTGCGGAACGTCCCTGAAGCAAATG CTTACTGGTACAATGATAAGGAAGAAACTCAAAAGTGCGATTCAGTTGATAEST: gi|50331482|gb|CO526608.1|CO526608
genomic: GCGTTGCGGAACGTCCCTGAAGCAAATGgtaatttcaa ... ctattgccagCTTACTGGAACAATGATAAGGAAGAAACTCAAAAGTGCGATTCAGTTGATA
EST: CATCATAAAGGCTGTGGCAATTGCGTTGCGGAACGTCCCTGAAGCAAATG CTTACTGGAACAATGATAAGGAAGAAACTCAAAAGTGCGATTCAGTTGATA
genomic: CATCATAAAGGCTGTGGCAATTGCGTTGCGGAACGTCCCTGAAGCAAATGgtaatttcaa ... ctattgccagCTTACTGGAACAATGATAAGGAAGAAACTCAAAAGTGCGATTCAGTTGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTACATGGCATTAAAGTTTCAGTAAATGACATCATCATAAAGGCTGTGGCAATTGCGTTGCGGAACGTCCCTGAAGCAAATGgtaatttcaaaataacaaaacaaacatcaaattccaaagtttttttaggcatggaactagaattgttcaattacttatttgtcagatgcacgagtcacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaaa