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TGTAGGGGCAATATTCTGCTTTGGTGCTTTTTGTTTCAAGAGCCTTTATGGGTTCATACCCTCCTTTGCAGTTGGGGAGCTTTCAGTGTTCGCAACTCAGgtaattgctttgttcaattgttctgtacaacattttcatactacttcattctatatcttaatatcattattcacctgcaatggtaatttctgcacgtgta...
species | Zea mays |
transcript | GRMZM2G062024_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GGTTCATACCCTCCTTTGCAGTTGGGGAGCTTTCAGTGTTCGCAACTCAG GCACCTGTAAATTTTGTATGCCTTCACGCCGTGAAGCCACATTTGCGGCCAEST: gi|32840289|gb|CD979970.1|CD979970
genomic: GGTTCATACCCTCCTTTGCAGTTGGGGAGCTTTCAGTGTTCGCAACTCAGgtaattgctt ... tggtttgcagGCACCTGTAAATTTTGTATGCCTTCACGCCGTGAAGCCACATTTGCGGCCA
EST: GGTTCATACCCTCCTTTGCAGTTGGGGAGCTTTCAGTGTTCGCAACTCAG GCACCTGTAAATTTTGTATGCCTTCACGCCGTGAAGCCACATTTGCGGCCAEST: gi|32840250|gb|CD979931.1|CD979931
genomic: GGTTCATACCCTCCTTTGCAGTTGGGGAGCTTTCAGTGTTCGCAACTCAGgtaattgctt ... tggtttgcagGCACCTGTAAATTTTGTATGCCTTCACGCCGTGAAGCCACATTTGCGGCCA
EST: GGTTCATACCCTCCTTTGCAGTTGGGGAGCTTTCAGTGTTCGCAACTCAG GCACCTGTAAATTTTGTATGCCTTCACGCCGTGAAGCCACATTTGCGGCCAEST: gi|32840295|gb|CD979976.1|CD979976
genomic: GGTTCATACCCTCCTTTGCAGTTGGGGAGCTTTCAGTGTTCGCAACTCAGgtaattgctt ... tggtttgcagGCACCTGTAAATTTTGTATGCCTTCACGCCGTGAAGCCACATTTGCGGCCA
EST: GGTTCATACCCTCCTTTGCAGTTGGGGAGCTTTCAGTGTTCGCAACTCAG GCACCTGTAAATTTTGTATGCCTTCACGCCGTGAAGCCACATTTGCGGCCAEST: gi|211124332|gb|FL444268.1|FL444268
genomic: GGTTCATACCCTCCTTTGCAGTTGGGGAGCTTTCAGTGTTCGCAACTCAGgtaattgctt ... tggtttgcagGCACCTGTAAATTTTGTATGCCTTCACGCCGTGAAGCCACATTTGCGGCCA
EST: TTTCAGTGTTCGCAACTCAG GCACCTGTAAATTTTGTATGCCTTCACGCCGTGAAGCCACATTTGCGGCCAEST: gi|60350509|gb|DN217482.1|DN217482
genomic: TTTCAGTGTTCGCAACTCAGgtaattgctt ... tggtttgcagGCACCTGTAAATTTTGTATGCCTTCACGCCGTGAAGCCACATTTGCGGCCA
EST: GGTTCATACCCTCCTTTGCAGTTGGGGAGCTTTCAGTGTTCGCAACTCAG GCACCTGTAAATTTTGTATGCCTTCACGCCGTGAAGCCACATTTGCGGCCAEST: gi|32840308|gb|CD979989.1|CD979989
genomic: GGTTCATACCCTCCTTTGCAGTTGGGGAGCTTTCAGTGTTCGCAACTCAGgtaattgctt ... tggtttgcagGCACCTGTAAATTTTGTATGCCTTCACGCCGTGAAGCCACATTTGCGGCCA
EST: GGTTCATACCCTCCTTTGCAGTTGGGGAGCTTTCAGTGTTCGCAACTCAG GCACCTGTAAATTTTGTATGCCTTCACGCCGTGAAGCCACATTTGCGGCCAEST: gi|5108252|gb|AI739965.1|AI739965
genomic: GGTTCATACCCTCCTTTGCAGTTGGGGAGCTTTCAGTGTTCGCAACTCAGgtaattgctt ... tggtttgcagGCACCTGTAAATTTTGTATGCCTTCACGCCGTGAAGCCACATTTGCGGCCA
EST: GTTCATACCCTCCTTTGCAGTTGGGGAGCTTTCAGTGTTCGCAACTCAG GCACCTGTAAATTTTGTATGCCTTCACGCCGTGAAGCCACATTTGCGGCCAEST: gi|32840674|gb|CD980355.1|CD980355
genomic: GTTCATACCCTCCTTTGCAGTTGGGGAGCTTTCAGTGTTCGCAACTCAGgtaattgctt ... tggtttgcagGCACCTGTAAATTTTGTATGCCTTCACGCCGTGAAGCCACATTTGCGGCCA
EST: GGTTCATACCCTCCTTTGCAGTTGGGGAGCTTTCAGTGTTCGCAACTCAG GCACCTGTAAATTTTGTATGCCTTCACGCCGTGAAGCCACATTTGCGGCCAEST: gi|29545180|gb|CB605358.1|CB605358
genomic: GGTTCATACCCTCCTTTGCAGTTGGGGAGCTTTCAGTGTTCGCAACTCAGgtaattgctt ... tggtttgcagGCACCTGTAAATTTTGTATGCCTTCACGCCGTGAAGCCACATTTGCGGCCA
EST: GGTTCATACCCTCCTTTGCAGTTGGGGAGCTTTCAGTGTTCGCAACTCAG GCACCTGTAAATTTTGTATGCCTTCACGCCGTGAAGCCACATTTGCGGCCAEST: gi|32840071|gb|CD979752.1|CD979752
genomic: GGTTCATACCCTCCTTTGCAGTTGGGGAGCTTTCAGTGTTCGCAACTCAGgtaattgctt ... tggtttgcagGCACCTGTAAATTTTGTATGCCTTCACGCCGTGAAGCCACATTTGCGGCCA
EST: GGTTCATACCCTCCTTTGCAGTTGGGGAGCTTTCAGTGTTCGCAACTCAG GCACCTGTAAATTTTGTATGCCTTCACGCCGTGAAGCCACATTTGCGGCCAEST: gi|32840128|gb|CD979809.1|CD979809
genomic: GGTTCATACCCTCCTTTGCAGTTGGGGAGCTTTCAGTGTTCGCAACTCAGgtaattgctt ... tggtttgcagGCACCTGTAAATTTTGTATGCCTTCACGCCGTGAAGCCACATTTGCGGCCA
EST: GGTTCATACCCTCCTTTGCAGTTGGGGAGCTTTCAGTGTTCGCAACTCAG GCACCCTGGTAAATTTTGTATGCCTTCACGCCGTGAAGCCACATTTGCGGC
genomic: GGTTCATACCCTCCTTTGCAGTTGGGGAGCTTTCAGTGTTCGCAACTCAGgtaattgctt ... tggtttgcagGCA-CCT-GTAAATTTTGTATGCCTTCACGCCGTGAAGCCACATTTGCGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTAGGGGCAATATTCTGCTTTGGTGCTTTTTGTTTCAAGAGCCTTTATGGGTTCATACCCTCCTTTGCAGTTGGGGAGCTTTCAGTGTTCGCAACTCAGgtaattgctttgttcaattgttctgtacaacattttcatactacttcattctatatcttaatatcattattcacctgcaatggtaatttctgcacgtgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT