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AGCTTACGGAGAGTATGCAAAAGTTGCTCATTGTTATGCAAAGATTAGATGAAAAGATCGGGCCAATGCTAGAAGCAGATGGAGAACTTTTCAATAAAAGgtacatcaatgaatatgtaaattcttattcttgtagcgaatttgggaaatccttcaaatctgggtgttccgatcaattatcccatatattccttgcatag...
species | Zea mays |
transcript | GRMZM2G044819_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GAAAAGATCGGGCCAATGCTAGAAGCAGATGGAGAACTTTTCAATAAAAG ATGGGGTTGGTTGTCACGTGCTGGCCTATGGGATAAGAGTCATCTTACCAGEST: gi|78025583|gb|DV493970.1|DV493970
genomic: GAAAAGATCGGGCCAATGCTAGAAGCAGATGGAGAACTTTTCAATAAAAGgtacatcaat ... tcctcttaagATGGGGTTGGTTGTCACGTGCTGGTCTATGGGATAAGAGTCATCTTACCAG
EST: GAAAAGATCGGGCCAATGCTAGAAGCAGATGGAGAACTTTTCAATAAAAG ATGGGGTTGGTTGTCACGTGCTGGCCTATGGGATAAGAGTCATCTTACCAGEST: gi|5713778|gb|AI943770.1|AI943770
genomic: GAAAAGATCGGGCCAATGCTAGAAGCAGATGGAGAACTTTTCAATAAAAGgtacatcaat ... tcctcttaagATGGGGTTGGTTGTCACGTGCTGGTCTATGGGATAAGAGTCATCTTACCAG
EST: CTAGAAGCAGATGGAG-ACTTTTCAAT-AAAG ATGGGGTTGGTTGTCACGTGCTGGCCTATGGGATAAGAGTCATCTTACCAGEST: gi|211089552|gb|FL477198.1|FL477198
genomic: CTAGAAGCAGATGGAGAACTTTTCAATAAAAGgtacatcaat ... tcctcttaagATGGGGTTGGTTGTCACGTGCTGGTCTATGGGATAAGAGTCATCTTACCAG
EST: TGGAGGAACTTTTTCAATAAAAG ATGGGGGTTGGTTGTCCACGTGCTGGTCTATGGGATAAGAGTCATCTTACCEST: gi|211089553|gb|FL477199.1|FL477199
genomic: TGGA-GAAC-TTTTCAATAAAAGgtacatcaat ... tcctcttaagAT-GGGGTTGGTTGT-CACGTGCTGGTCTATGGGATAAGAGTCATCTTACC
EST: GAAAAGATCGGGCCAATGCTAGAAGCAGATGGAGAACTTTTCAATAAAAG ATGGGGTTGGTTGTCACGTGCTGGTCTATGGGATAAGAGTCATCTTACCAGEST: gi|148967092|gb|EE018262.2|EE018262
genomic: GAAAAGATCGGGCCAATGCTAGAAGCAGATGGAGAACTTTTCAATAAAAGgtacatcaat ... tcctcttaagATGGGGTTGGTTGTCACGTGCTGGTCTATGGGATAAGAGTCATCTTACCAG
EST: GAAAAGATCGGGCCAATGCTAGAAGCAGATGGAGAACTTTTCAATAAAAG ATGGGGTTGGTTGTCACGTGCTGGTCTATGGGATAAGAGTCATCTTACCAGEST: gi|12973741|gb|BG268632.1|BG268632
genomic: GAAAAGATCGGGCCAATGCTAGAAGCAGATGGAGAACTTTTCAATAAAAGgtacatcaat ... tcctcttaagATGGGGTTGGTTGTCACGTGCTGGTCTATGGGATAAGAGTCATCTTACCAG
EST: GAAAAGATCGGGCCAATGCTAGAAGCAGATGGAGAACTTTTCAATAAAAG ATGGGGTTGGTTGTCACGTGCTGGCCTATGGGATAAGAGTCATCTTACCAGEST: gi|16917596|gb|BM073359.1|BM073359
genomic: GAAAAGATCGGGCCAATGCTAGAAGCAGATGGAGAACTTTTCAATAAAAGgtacatcaat ... tcctcttaagATGGGGTTGGTTGTCACGTGCTGGTCTATGGGATAAGAGTCATCTTACCAG
EST: GAAAAGATCGGGCCAATGCTAGAAGCAGATGGAGAACTTTTCAATAAAAG ATGGGGTTGGTTGTCACGTGCTGGTCTATGGGATAAGAGTCATCTTACCAG
genomic: GAAAAGATCGGGCCAATGCTAGAAGCAGATGGAGAACTTTTCAATAAAAGgtacatcaat ... tcctcttaagATGGGGTTGGTTGTCACGTGCTGGTCTATGGGATAAGAGTCATCTTACCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTTACGGAGAGTATGCAAAAGTTGCTCATTGTTATGCAAAGATTAGATGAAAAGATCGGGCCAATGCTAGAAGCAGATGGAGAACTTTTCAATAAAAGgtacatcaatgaatatgtaaattcttattcttgtagcgaatttgggaaatccttcaaatctgggtgttccgatcaattatcccatatattccttgcatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA