1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GCTTTTGCAATGGGGCTTCAGGCTGTTGGAGCAAACCGTCAGTATCTTGGTTCTGCATGTGTATATCTTTCAGTTGGTGGCATTCTGTTgtaagttccaagagtgatacattttgtagcttagttctctgtctgtttcatactaatattctacattaatttatcctagattatgtcctgtcctgccttt...
species | Zea mays |
transcript | GRMZM2G412899_T05 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CAGTATCTTGGTTCTGCATGTGTATATCTTTCAGTTGGTGGCATTCTGTT GTTTGTCTTGTCATTTTCACTAGGAGCAGGCCCTGTCCCAGGACTTCTTTTEST: gi|78119069|gb|DV537453.1|DV537453
genomic: CAGTATCTTGGTTCTGCATGTGTATATCTTTCAGTTGGTGGCATTCTGTTgtaagttcca ... atttttgcagGTTTGTCTTGTCATTTTCACTAGGAGCAGGCCCTGTCCCAGGACTTCTTTT
EST: CAGTATCTTGGTTCTGCATGTGTATATCTTTCAGTTGGTGGCATTCTGTT GTTTGTCTTGTCATTTTCACTAGGAGCAGGCCCTGTCCCAGGACTTCTTTTEST: gi|71321128|gb|DR797263.1|DR797263
genomic: CAGTATCTTGGTTCTGCATGTGTATATCTTTCAGTTGGTGGCATTCTGTTgtaagttcca ... atttttgcagGTTTGTCTTGTCATTTTCACTAGGAGCAGGCCCTGTCCCAGGACTTCTTTT
EST: CAGTATCTTGGTTCTGCATGTGTATATCTTTCAGTTGGTGGCATTCTGTT GTTTGTCTTGTCATTTTCACTAGGAGCAGGCCCTGTCCCAGGACTTCTTTTEST: gi|78110186|gb|DV528601.1|DV528601
genomic: CAGTATCTTGGTTCTGCATGTGTATATCTTTCAGTTGGTGGCATTCTGTTgtaagttcca ... atttttgcagGTTTGTCTTGTCATTTTCACTAGGAGCAGGCCCTGTCCCAGGACTTCTTTT
EST: CAGTATCTTGGTTCTGCATGTGTATATCTTTCAGTTGGTGGCATTCTGTT GTTTGTCTTGTCATTTTCACTAGGAGCAGGCCCTGTCCCAGGACTTCTTTTEST: gi|71759302|gb|DR957239.1|DR957239
genomic: CAGTATCTTGGTTCTGCATGTGTATATCTTTCAGTTGGTGGCATTCTGTTgtaagttcca ... atttttgcagGTTTGTCTTGTCATTTTCACTAGGAGCAGGCCCTGTCCCAGGACTTCTTTT
EST: CAGTATCTTGGTTCTGCATGTGTATATCTTTCAGTTGGTGGCATTCTGTT GTTTGTCTTGTCATTTTCACTAGGAGCAGGCCCTGTCCCAGGACTTCTTTTEST: gi|148974491|gb|EE025274.2|EE025274
genomic: CAGTATCTTGGTTCTGCATGTGTATATCTTTCAGTTGGTGGCATTCTGTTgtaagttcca ... atttttgcagGTTTGTCTTGTCATTTTCACTAGGAGCAGGCCCTGTCCCAGGACTTCTTTT
EST: CAGTATCTTGGTTCTGCATGTGTATATCTTTCAGTTGGTGGCATTCTGTT GTTTGTCTTGTCATTTTCACTAGGAGCAGGCCCTGTCCCAGGACTTCTTTTEST: gi|76015719|gb|DT942889.1|DT942889
genomic: CAGTATCTTGGTTCTGCATGTGTATATCTTTCAGTTGGTGGCATTCTGTTgtaagttcca ... atttttgcagGTTTGTCTTGTCATTTTCACTAGGAGCAGGCCCTGTCCCAGGACTTCTTTT
EST: CATGTGTATATCTTTCAGTTGGTGGCATTCTGTT GTTTGTCTTGTCATTTTCACTAGGAGCAGGCCCTGTCCCAGGACTTCTTTTEST: gi|50326105|gb|CO521231.1|CO521231
genomic: CATGTGTATATCTTTCAGTTGGTGGCATTCTGTTgtaagttcca ... atttttgcagGTTTGTCTTGTCATTTTCACTAGGAGCAGGCCCTGTCCCAGGACTTCTTTT
EST: CAGTATCTTGGTTCTGCATGTGTATATCTTTCAGTTGGTGGCATTCTGTT GTTTGTCTTGTCATTTTCACTAGGAGCAGGCCCTGTCCCAGGACTTCTTTTEST: gi|71766867|gb|DR964804.1|DR964804
genomic: CAGTATCTTGGTTCTGCATGTGTATATCTTTCAGTTGGTGGCATTCTGTTgtaagttcca ... atttttgcagGTTTGTCTTGTCATTTTCACTAGGAGCAGGCCCTGTCCCAGGACTTCTTTT
EST: CAGTATCTTGGTTCTGCATGTGTATATCTTTCAGTTGGTGGCATTCTGTT GTTTGTCTTGTCATTTTCACT
genomic: CAGTATCTTGGTTCTGCATGTGTATATCTTTCAGTTGGTGGCATTCTGTTgtaagttcca ... atttttgcagGTTTGTCTTGTCATTTTCACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTTTGCAATGGGGCTTCAGGCTGTTGGAGCAAACCGTCAGTATCTTGGTTCTGCATGTGTATATCTTTCAGTTGGTGGCATTCTGTTgtaagttccaagagtgatacattttgtagcttagttctctgtctgtttcatactaatattctacattaatttatcctagattatgtcctgtcctgccttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG