1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttggattctatataatagcaatgttttcttcttcctaaatcttgacagatcactaacgtgcccatttaactttgcag
species | Zea mays |
transcript | GRMZM2G165357_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AATGTGAAGGAG TTGATCAACCCAGATGTGGCAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|18169307|gb|BM339147.1|BM339147
genomic: AATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|16922387|gb|BM075557.1|BM075557
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: TGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|13562266|gb|BG550486.1|BG550486
genomic: TGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|13558126|gb|BG549482.1|BG549482
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|5525817|gb|AI861710.1|AI861710
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|5871227|gb|AW017698.1|AW017698
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|18168819|gb|BM338659.1|BM338659
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|18172685|gb|BM348073.1|BM348073
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|149070502|gb|EE158906.2|EE158906
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|71444249|gb|DR825299.1|DR825299
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|211023433|gb|FL440281.1|FL440281
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|60394382|gb|DN227252.1|DN227252
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGEST: gi|6012581|gb|AW062018.1|AW062018
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTG
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACAATGACCGAGAACACTCCTGATGACEST: gi|211023434|gb|FL440282.1|FL440282
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATNGTGACAGTGACGATGACCGAGAACACTCCTGATGAEST: gi|32848833|gb|CD988514.1|CD988514
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGAT-GTGACAGTGACGATGACCGAGAACACTCCTGATGA
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGACEST: gi|18164214|gb|BM334053.1|BM334053
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|60342197|gb|DN209170.1|DN209170
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|32864569|gb|CF004251.1|CF004251
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGACEST: gi|71449952|gb|DR831002.1|DR831002
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|211225103|gb|FL464256.1|FL464256
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|14243914|gb|BG841625.2|BG841625
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|32850797|gb|CD990478.1|CD990478
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGACEST: gi|149082964|gb|EE172200.2|EE172200
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|18166053|gb|BM335892.1|BM335892
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|18171739|gb|BM341579.1|BM341579
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|18174516|gb|BM349904.1|BM349904
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: TGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|149065531|gb|EE286651.2|EE286651
genomic: TGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|60339871|gb|DN206844.1|DN206844
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCEST: gi|18173577|gb|BM348965.1|BM348965
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCC
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|18171489|gb|BM341329.1|BM341329
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GGAACCCAGGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGGACACTCCTGATGATEST: gi|18176777|gb|BM351710.1|BM351710
genomic: GGAACCCAGGTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|45213764|gb|CK850000.1|CK850000
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGATEST: gi|5847454|gb|AW000533.1|AW000533
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
EST: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAG TTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
genomic: GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttgga ... aactttgcagTTGATCAACCCAGATGTGACAGTGACGATGACCGAGAACACTCCTGATGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAATTCACCATGCTGGAACTTGCTGAGAATGTGAAGGAGgcaagttggattctatataatagcaatgttttcttcttcctaaatcttgacagatcactaacgtgcccatttaactttgcag
- - - - - ATGCTG
- - - - - - GCTGGA
- - - - - - - - - - - - - - - - - AAGGAG