1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CCGGCTCCTGGAGCAGATCGACCATAACTGCGCTGGCTTCTCAAAGGAGCAGAAGAATCCCGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATAgtgagtcctcggttctcgccctctcttctccgcatgcctgcagcgtattggactaaaactaactgatgtgtcggccatcgtgcaaatccag
species | Zea mays |
transcript | GRMZM2G101217_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AGAAGAATCCCGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATA CTTGATACTGCAGCCTTCATGGAGGAGTTTGGCATGCCGCTGAAGACGAGGEST: gi|60352980|gb|DN219953.1|DN219953
genomic: AGAAGAATCCCGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATAgtgagtcctc ... gcaaatccagCTTGATACTGCAGCCTTCATGGAGGAGTTTGGCATGCCGCTGAAGACGAGG
EST: AGAAGAATCCCGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATA CTTGATACTGCAGCCTTCATGGAGGAGTTTGGCATGCCGCTGAAGACGAGGEST: gi|71418851|gb|DR804567.1|DR804567
genomic: AGAAGAATCCCGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATAgtgagtcctc ... gcaaatccagCTTGATACTGCAGCCTTCATGGAGGAGTTTGGCATGCCGCTGAAGACGAGG
EST: AGAAGAATCCCGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATA CTTGATACTGCAGCCTTCATGGAGGAGTTTGGCATGCCGCTGAAGACGAGGEST: gi|211301901|gb|FL443563.1|FL443563
genomic: AGAAGAATCCCGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATAgtgagtcctc ... gcaaatccagCTTGATACTGCAGCCTTCATGGAGGAGTTTGGCATGCCGCTGAAGACGAGG
EST: AGAAGAATCCCGGCGCATTCAAACCCGTGAAGAAGAGGAGWACGWTCATA CTTGATACTGCAGCCTTCATGGAGGAGTTTGGCATGCCGCTGAAGACGAGGEST: gi|50337134|gb|CO532260.1|CO532260
genomic: AGAAGAATCCCGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATAgtgagtcctc ... gcaaatccagCTTGATACTGCAGCCTTCATGGAGGAGTTTGGCATGCCGCTGAAGACGAGG
EST: AGAAGAATCCCGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATA CTTGATACTGCAGCCTTCATGGAGGAGTTTGGCATGCCGCTGAAGACGAGGEST: gi|76281531|gb|DV021099.1|DV021099
genomic: AGAAGAATCCCGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATAgtgagtcctc ... gcaaatccagCTTGATACTGCAGCCTTCATGGAGGAGTTTGGCATGCCGCTGAAGACGAGG
EST: AGAAGAATCCCGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATA CTTGATACTGCAGCCTTCATGGAGGAGTTTGGCATGCCGCTGAAGACGAGGEST: gi|93012640|gb|EB638160.1|EB638160
genomic: AGAAGAATCCCGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATAgtgagtcctc ... gcaaatccagCTTGATACTGCAGCCTTCATGGAGGAGTTTGGCATGCCGCTGAAGACGAGG
EST: AGAAGAATCCCGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATA CTTGATACTGCAGCCTTCATGGAGGAGTTTGGCATGCCGCTGAAGACGAGGEST: gi|50325601|gb|CO520727.1|CO520727
genomic: AGAAGAATCCCGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATAgtgagtcctc ... gcaaatccagCTTGATACTGCAGCCTTCATGGAGGAGTTTGGCATGCCGCTGAAGACGAGG
EST: AGAAGAATCCCGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATA CTTGATACTGCAGCCTTCATGGAGGAGTTTGGCATGCCGCTGAAGACGAGGEST: gi|71763051|gb|DR960988.1|DR960988
genomic: AGAAGAATCCCGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATAgtgagtcctc ... gcaaatccagCTTGATACTGCAGCCTTCATGGAGGAGTTTGGCATGCCGCTGAAGACGAGG
EST: AGAAGAATCCCGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATA CTTGATACTGCAGCCTTCATGGAGGAGTTTGGCATGCCGCTGAAGACGAGGEST: gi|50336105|gb|CO531231.1|CO531231
genomic: AGAAGAATCCCGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATAgtgagtcctc ... gcaaatccagCTTGATACTGCAGCCTTCATGGAGGAGTTTGGCATGCCGCTGAAGACGAGG
EST: AGAAGAATCCCGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATA CTTGATACTGCAGCCTTCATGGAGGAGTTTGGCATGCCGCTGAAGACGAGGEST: gi|161587502|gb|EY961654.1|EY961654
genomic: AGAAGAATCCCGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATAgtgagtcctc ... gcaaatccagCTTGATACTGCAGCCTTCATGGAGGAGTTTGGCATGCCGCTGAAGACGAGG
EST: CGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATA CTTGATACTGCAGCCTTCATGGAGGAGTTTGGCATGCCGCTGAAGACGAGGEST: gi|148960596|gb|EE011218.2|EE011218
genomic: CGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATAgtgagtcctc ... gcaaatccagCTTGATACTGCAGCCTTCATGGAGGAGTTTGGCATGCCGCTGAAGACGAGG
EST: AGAAGAATCCCGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATA CTTGATACTGCAGCCTTCATGGAGGAGTTTGGCATGCCGCTGAAGACGAGG
genomic: AGAAGAATCCCGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATAgtgagtcctc ... gcaaatccagCTTGATACTGCAGCCTTCATGGAGGAGTTTGGCATGCCGCTGAAGACGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGGCTCCTGGAGCAGATCGACCATAACTGCGCTGGCTTCTCAAAGGAGCAGAAGAATCCCGGCGCATTCAAACCCGTGAAGAAGAGGAGAACGATCATAgtgagtcctcggttctcgccctctcttctccgcatgcctgcagcgtattggactaaaactaactgatgtgtcggccatcgtgcaaatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA