1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGCTGATGTTTTAAAGCAGGAAAATGCTTCACTTAGAGATGAAGTAAACCGTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAGgttagtctgcaacttttcaattttattctgctgaagtacgtatgttaacatctctgttctgctttctgctgtgtag
species | Zea mays |
transcript | GRMZM2G088140_T03 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAG GAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAACEST: gi|60345747|gb|DN212720.1|DN212720
genomic: GTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAGgttagtctgc ... tgctgtgtagGAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAAC
EST: GTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAG GAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAACEST: gi|60350100|gb|DN217073.1|DN217073
genomic: GTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAGgttagtctgc ... tgctgtgtagGAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAAC
EST: GTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAG GAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAACEST: gi|32867163|gb|CF006845.1|CF006845
genomic: GTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAGgttagtctgc ... tgctgtgtagGAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAAC
EST: GTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAG GAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAACEST: gi|211353575|gb|FL066643.1|FL066643
genomic: GTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAGgttagtctgc ... tgctgtgtagGAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAAC
EST: GTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAG GAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAACEST: gi|60337844|gb|DN204817.1|DN204817
genomic: GTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAGgttagtctgc ... tgctgtgtagGAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAAC
EST: GTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAG GAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAACEST: gi|32834586|gb|CD974264.1|CD974264
genomic: GTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAGgttagtctgc ... tgctgtgtagGAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAAC
EST: ACGAGGAACTTCTATCAAGGAATAACTCACTAAAG GAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAACEST: gi|60353486|gb|DN220459.1|DN220459
genomic: ACGAGGAACTTCTATCAAGGAATAACTCACTAAAGgttagtctgc ... tgctgtgtagGAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAAC
EST: GTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAG GAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAACEST: gi|32832648|gb|CD972326.1|CD972326
genomic: GTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAGgttagtctgc ... tgctgtgtagGAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAAC
EST: TACGAGGAACTTCTATCAAGGAATAACTCACTAAAG GAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAACEST: gi|211496290|gb|FL041702.1|FL041702
genomic: TACGAGGAACTTCTATCAAGGAATAACTCACTAAAGgttagtctgc ... tgctgtgtagGAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAAC
EST: GTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAG GAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAACEST: gi|71772544|gb|DR970475.1|DR970475
genomic: GTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAGgttagtctgc ... tgctgtgtagGAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAAC
EST: GTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAG GAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAACEST: gi|211091177|gb|FL442412.1|FL442412
genomic: GTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAGgttagtctgc ... tgctgtgtagGAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAAC
EST: GTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAG GAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCTGGACTTAACAACEST: gi|32834651|gb|CD974329.1|CD974329
genomic: GTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAGgttagtctgc ... tgctgtgtagGAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAAC
EST: ACGAGGAACTTCTATCAAGGAATAACTCACTAAAG GAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAACEST: gi|211088628|gb|FL437494.1|FL437494
genomic: ACGAGGAACTTCTATCAAGGAATAACTCACTAAAGgttagtctgc ... tgctgtgtagGAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAAC
EST: GTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAG GAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCTGGACTTAACAACEST: gi|32931454|gb|CF036266.1|CF036266
genomic: GTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAGgttagtctgc ... tgctgtgtagGAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAAC
EST: GTACGAGGAACTTCTATCAAGGAATAACTCACTAAAG GAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAACEST: gi|211467879|gb|FL454207.1|FL454207
genomic: GTACGAGGAACTTCTATCAAGGAATAACTCACTAAAGgttagtctgc ... tgctgtgtagGAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAAC
EST: GTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAG GAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCTGGACTTAACAAC
genomic: GTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAGgttagtctgc ... tgctgtgtagGAAAAACTTGAAGGCAAACAACACAAAACTGATGAGGCAGGACTTAACAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGATGTTTTAAAGCAGGAAAATGCTTCACTTAGAGATGAAGTAAACCGTATCAGAAAAGAGTACGAGGAACTTCTATCAAGGAATAACTCACTAAAGgttagtctgcaacttttcaattttattctgctgaagtacgtatgttaacatctctgttctgctttctgctgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA