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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGTGAAAATCATCCACAGGGTGTCATTTTGGTGAAATTCAAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAACGGTAGATGgtgagtcaacaactcaactggtgctcaaaggggtacggtgctcaagtgcacattttaaatctgggacatccatctcacatccagcggcagcagttaattt...

Basic information

species Zea mays
transcript GRMZM2G074351_T01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G074351_T02 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os04g41910.1 (Oryza sativa), 5'ss of exon 12
GTTTGTGAAAATCATCCACAGGGTGTCATTTTGGTGAAATTCAAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAACGGTAGATGgtgag--tcaaca---actcaactggtgctcaaaggggtacggtgctcaagtgcacattttaaatctgggacatccatctcacatccagcggcagcagttaattt
|| ||||||||||||||| ||||||| ||||||||||||||||||||  | |||||||||  ||||||||||||||||||||| || |||||||  |  ||||||     |||  | |  | |   ||  |  | |||     ||  |   | ||||   |    |  |     |||  | |   ||      |   
GTCTGTGAAAATCATCCAGAGGGTGTTATTTTGGTGAAATTCAAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATGgtaggcttcaacataatatcagttagctcaccttggtttctgatgcgttgatgttccagtaaaat--agtgtgtttaatctgcataaaccttgagtttgcca---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71322081|gb|DR797734.1|DR797734
EST:     AAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAACGGTAGATG                         GTTTGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCA
genomic: AAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAACGGTAGATGgtgagtcaac ... tgccttgcagGTTTGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCA
EST: gi|211121225|gb|FL444926.1|FL444926
EST:     AAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAATGGTAGATG                         GTTCGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCA
genomic: AAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAACGGTAGATGgtgagtcaac ... tgccttgcagGTTTGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCA
EST: gi|60339717|gb|DN206690.1|DN206690
EST:     AAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAATGGTAGATG                         GTTCGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCA
genomic: AAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAACGGTAGATGgtgagtcaac ... tgccttgcagGTTTGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCA
EST: gi|93283666|gb|EB675930.1|EB675930
EST:     AAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAACGGTAGATG                         GTTTGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCA
genomic: AAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAACGGTAGATGgtgagtcaac ... tgccttgcagGTTTGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCA
EST: gi|32837936|gb|CD977614.1|CD977614
EST:     AAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAATGGTAGATG                         GTTCGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCA
genomic: AAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAACGGTAGATGgtgagtcaac ... tgccttgcagGTTTGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCA
EST: gi|211013609|gb|FL363381.1|FL363381
EST:     AAAGA-A-AAAT-ATGGTGCCAAATGCATAGAGAAGATGAATGGTAGATG                         GTTCGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCA
genomic: AAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAACGGTAGATGgtgagtcaac ... tgccttgcagGTTTGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCA
EST: gi|211309996|gb|FL325113.1|FL325113
EST:     AAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAATGGTAGATG                         GTTCGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCA
genomic: AAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAACGGTAGATGgtgagtcaac ... tgccttgcagGTTTGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCA
EST: gi|32933834|gb|CF038646.1|CF038646
EST:     AAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAATGGTAGATG                         GTTCGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCA
genomic: AAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAACGGTAGATGgtgagtcaac ... tgccttgcagGTTTGCTGGGCAGCAAATCCATGCGAGTGAAGATGATGGTTCTGTTAACCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTGTGAAAATCATCCACAGGGTGTCATTTTGGTGAAATTCAAAGATAGAAAAGATGGTGCCAAATGCATAGAGAAGATGAACGGTAGATGgtgagtcaacaactcaactggtgctcaaaggggtacggtgctcaagtgcacattttaaatctgggacatccatctcacatccagcggcagcagttaattt

- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG