1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGAGCGGTTGACTGGTCCGGACCCTGATCTCACGGACCAGGAGAGGCTGATGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGgtccagttgagaacaactaaccctattcctatgtgctggtgtataaacaaacaagctcattgggatgatcactcaggtggtactgggtactaacaagtatatgcgtatgacatgaactgcag
species | Zea mays |
transcript | GRMZM2G052546_T04 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGG TEST: gi|76914763|gb|DV165676.1|DV165676
genomic: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGA-Ggtccagttga ... tgaactgcag-
EST: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGG TEST: gi|76914763|gb|DV165676.1|DV165676
genomic: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGA-Ggtccagttga ... tgaactgcag-
EST: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGG TEST: gi|76914763|gb|DV165676.1|DV165676
genomic: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGA-Ggtccagttga ... tgaactgcag-
EST: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGG TEST: gi|76914763|gb|DV165676.1|DV165676
genomic: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGA-Ggtccagttga ... tgaactgcag-
EST: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGG TEST: gi|45847997|gb|CN071940.1|CN071940
genomic: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGA-Ggtccagttga ... tgaactgcag-
EST: TGATCAGAGAGTACCTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAG AAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGACEST: gi|211409237|gb|FL441028.1|FL441028
genomic: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGgtccagttga ... tgaactgcagAAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGAC
EST: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAG AAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGACEST: gi|33091895|gb|CF051889.1|CF051889
genomic: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGgtccagttga ... tgaactgcagAAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGAC
EST: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAG AAGAATGATGATGACTGAEST: gi|78021110|gb|DV489497.1|DV489497
genomic: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGgtccagttga ... tgaactgcagAAGAATGATGATGACTGA
EST: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGG TEST: gi|78021110|gb|DV489497.1|DV489497
genomic: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGA-Ggtccagttga ... tgaactgcag-
EST: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGG TEST: gi|78021110|gb|DV489497.1|DV489497
genomic: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGA-Ggtccagttga ... tgaactgcag-
EST: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGG TEST: gi|78021110|gb|DV489497.1|DV489497
genomic: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGA-Ggtccagttga ... tgaactgcag-
EST: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGG TEST: gi|78021110|gb|DV489497.1|DV489497
genomic: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGA-Ggtccagttga ... tgaactgcag-
EST: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGG TEST: gi|15426921|gb|BI542743.1|BI542743
genomic: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGA-Ggtccagttga ... tgaactgcag-
EST: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAG AAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGACEST: gi|5650248|gb|AI920608.1|AI920608
genomic: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGgtccagttga ... tgaactgcagAAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGAC
EST: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAG GEST: gi|5650248|gb|AI920608.1|AI920608
genomic: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGgtccagttga ... tgaactgcag-
EST: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAG GEST: gi|5650248|gb|AI920608.1|AI920608
genomic: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGgtccagttga ... tgaactgcag-
EST: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAG GEST: gi|5650248|gb|AI920608.1|AI920608
genomic: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGgtccagttga ... tgaactgcag-
EST: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAG GEST: gi|5650248|gb|AI920608.1|AI920608
genomic: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGgtccagttga ... tgaactgcag-
EST: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAG G
genomic: TGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGgtccagttga ... tgaactgcag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGCGGTTGACTGGTCCGGACCCTGATCTCACGGACCAGGAGAGGCTGATGATCAGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGgtccagttgagaacaactaaccctattcctatgtgctggtgtataaacaaacaagctcattgggatgatcactcaggtggtactgggtactaacaagtatatgcgtatgacatgaactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -TGCCGCCG