1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CGATATTTACACGAGCAAGCTTGAGAACTTCTTATCATATGCCCCTGAATCTTGGCTTCATCCACCTCATGACATAAAGATCATGCCACACAATGCGAAGgtagtctgaatcttcctctatggaattcacttggcttgtcaaataatcgtaactattgtcattgttctcgtgtttttccaacagttattgtggttcaaatgctaatatattaataattgaattgggataatgatttggacattccattttgtag
species | Zea mays |
transcript | GRMZM2G040945_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CTTGGCTTCATCCACCTCATGACATAAAGATCATGCCACACAATGCGAAG GTCCCAGCGAGCCTTTTCAGTACCTCCTAGTTCATCCTTTCTCTATTTCGGEST: gi|78103884|gb|DV522307.1|DV522307
genomic: CTTGGCTTCATCCACCTCATGACATAAAGATCATGCCACACAATGCGAAGgtagtctgaa ... cattttgtagGTCCCAGCGAGCCTTTTCAGTACCTCCTAGTTCATCCTTTCTCTATTTCGG
EST: CTTGGCTTCATCCACCTCATGACATAAAGATCATGCCACACAATGCGAAG GTCCCAGCGAGCCTTTTCAGTACCTCCTAGTTCATCCTTTCTCTATTTCGGEST: gi|37376782|gb|CF624947.1|CF624947
genomic: CTTGGCTTCATCCACCTCATGACATAAAGATCATGCCACACAATGCGAAGgtagtctgaa ... cattttgtagGTCCCAGCGAGCCTTTTCAGTACCTCCTAGTTCATCCTTTCTCTATTTCGG
EST: CTTGGCTTCATCCACCTCATGACATAAAGATCATGCCACACAATGCGAAG GTCCCAGCGAGCCTTTTCAGTACCTCCTAGTTCATCCTTTCTCTATTTCGGEST: gi|211237930|gb|FL472834.1|FL472834
genomic: CTTGGCTTCATCCACCTCATGACATAAAGATCATGCCACACAATGCGAAGgtagtctgaa ... cattttgtagGTCCCAGCGAGCCTTTTCAGTACCTCCTAGTTCATCCTTTCTCTATTTCGG
EST: CTTGGCTTCATCCACCTCATGACATAAAGATCATGCCACACAATGCGAAG GTCCCAGCGAGCCTTTTCAGTACCTCCTAGTTCATCCTTTCTCTATTTCGGEST: gi|76925057|gb|DV170274.1|DV170274
genomic: CTTGGCTTCATCCACCTCATGACATAAAGATCATGCCACACAATGCGAAGgtagtctgaa ... cattttgtagGTCCCAGCGAGCCTTTTCAGTACCTCCTAGTTCATCCTTTCTCTATTTCGG
EST: CTTGGCTTCATCCACCTCATGACATAAAGATCATGCCACACAATGCGAAG GTCCCAGCGAGCCTTTTCAGTACCTCCTAGTTCATCCTTTCTCTATTTCGGEST: gi|71771542|gb|DR969479.1|DR969479
genomic: CTTGGCTTCATCCACCTCATGACATAAAGATCATGCCACACAATGCGAAGgtagtctgaa ... cattttgtagGTCCCAGCGAGCCTTTTCAGTACCTCCTAGTTCATCCTTTCTCTATTTCGG
EST: CTTGGCTTCATCCACCTCATGACATAAAGATCATGCCACACAATGCGAAG GTCCCAGCGAGCCTTTTCAGTACCTCCTAGTTCATCCTTTTTCTATTTCGGEST: gi|211404930|gb|FL464353.1|FL464353
genomic: CTTGGCTTCATCCACCTCATGACATAAAGATCATGCCACACAATGCGAAGgtagtctgaa ... cattttgtagGTCCCAGCGAGCCTTTTCAGTACCTCCTAGTTCATCCTTTCTCTATTTCGG
EST: CTTGGCTTCATCCACCTCATGACATAAAGATCATGCCACACAATGCGAAG GTCCCAGCGAGCCTTTTCAGTACCTCCTAGTTCATCCTTTCTCTATTTCGGEST: gi|211484982|gb|FL397179.1|FL397179
genomic: CTTGGCTTCATCCACCTCATGACATAAAGATCATGCCACACAATGCGAAGgtagtctgaa ... cattttgtagGTCCCAGCGAGCCTTTTCAGTACCTCCTAGTTCATCCTTTCTCTATTTCGG
EST: CTTGGCTTCATCCACCTCATGACATAAAGATCATGCCACACAATGCGAAG GTCCCAGCGAGCCTTTTCAGTACCTCCTAGTTCATCCTTTCTCTATTTCGGEST: gi|76020212|gb|DT947382.1|DT947382
genomic: CTTGGCTTCATCCACCTCATGACATAAAGATCATGCCACACAATGCGAAGgtagtctgaa ... cattttgtagGTCCCAGCGAGCCTTTTCAGTACCTCCTAGTTCATCCTTTCTCTATTTCGG
EST: CTTGGCTTCATCCACCTCATGACATAAAGATCATGCCACACAATGCGAAG GTCCCAGCGAGCCTTTTCAGTACCTCCTAGTTCATCCTTTCTCTATTTCGGEST: gi|37391883|gb|CF633186.1|CF633186
genomic: CTTGGCTTCATCCACCTCATGACATAAAGATCATGCCACACAATGCGAAGgtagtctgaa ... cattttgtagGTCCCAGCGAGCCTTTTCAGTACCTCCTAGTTCATCCTTTCTCTATTTCGG
EST: CTTGGCTTCATCCACCTCATGACATAAAGATCATGCCACACAATGCGAAG GTCCCAGCGAGCCTTTTCAGTACCTCCTAGTTCATCCTTTCTCTATTTCGG
genomic: CTTGGCTTCATCCACCTCATGACATAAAGATCATGCCACACAATGCGAAGgtagtctgaa ... cattttgtagGTCCCAGCGAGCCTTTTCAGTACCTCCTAGTTCATCCTTTCTCTATTTCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATATTTACACGAGCAAGCTTGAGAACTTCTTATCATATGCCCCTGAATCTTGGCTTCATCCACCTCATGACATAAAGATCATGCCACACAATGCGAAGgtagtctgaatcttcctctatggaattcacttggcttgtcaaataatcgtaactattgtcattgttctcgtgtttttccaacagttattgtggttcaaatgctaatatattaataattgaattgggataatgatttggacattccattttgtag
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