1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTGAAACAGAACACCGTGTCAAGGGAGCGTCAGAACGTTGAGCTTCTAGCAAGAGGGCGCCATGACCCATGCGTCGCCCCTCGAGgtaatggcaccgtgtaatgacgctcctcgctgctagtgctaccgttctttaatttcttccctgcgaggctgcgactgcgatacgaggtttgctcttgacgtggcttttgcag
species | Zea mays |
transcript | GRMZM2G036861_T01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CGTTGAGCTTCTAGCAAGAGGGCGCCATGACCCATGGGTCGCCCCTCGAG CTGTTCCTGTGGTGGAATCCATGGCCGCGTTGGTCCTCATGGACCAGCTGAEST: gi|16925294|gb|BM078362.1|BM078362
genomic: CGTTGAGCTTCTAGCAAGAGGGCGCCATGACCCATGCGTCGCCCCTCGAGgtaatggcac ... gcttttgcagCTGTTCCTGTGGTGGAATCCATGGCCGCGTTGGTCCTCATGGACCAGCTGA
EST: CGTTGAGCTTCTAGCAAGAGGGCGCCATGACCCATGCGTCGCCCCTCGAG CTGTTCCTGTGGTGGAATCCATGGCCGCGTTGGTCCTCATGGACCAGCTGAEST: gi|148951093|gb|EC896758.2|EC896758
genomic: CGTTGAGCTTCTAGCAAGAGGGCGCCATGACCCATGCGTCGCCCCTCGAGgtaatggcac ... gcttttgcagCTGTTCCTGTGGTGGAATCCATGGCCGCGTTGGTCCTCATGGACCAGCTGA
EST: CGTTGAGCTTCTAGCAAGAGGGCGCCATGACCCATGCGTCGCCCCTCGAG CTGTTCCTGTGGTGGAATCCATGGCCGCGTTGGTCCTCATGGACCAGCTGAEST: gi|78109643|gb|DV528059.1|DV528059
genomic: CGTTGAGCTTCTAGCAAGAGGGCGCCATGACCCATGCGTCGCCCCTCGAGgtaatggcac ... gcttttgcagCTGTTCCTGTGGTGGAATCCATGGCCGCGTTGGTCCTCATGGACCAGCTGA
EST: CGTTGAGCTTCTAGCAAGAGGGCGCCATGACCCATGCGTCGCCCCTCGAG CTGTTCCTGTGGTGGAATCCATGGCCGCGTTGGTCCTCATGGACCAGCTGAEST: gi|76281789|gb|DV021357.1|DV021357
genomic: CGTTGAGCTTCTAGCAAGAGGGCGCCATGACCCATGCGTCGCCCCTCGAGgtaatggcac ... gcttttgcagCTGTTCCTGTGGTGGAATCCATGGCCGCGTTGGTCCTCATGGACCAGCTGA
EST: CGTTGAGCTTCTAGCAAGAGGGCGCCATGACCCATGCGTCGCCCCTCGAG CTGTTCCTGTGGTGGAATCCATGGCCGCGTTGGTCCTCATGGACCAGCTGAEST: gi|148940355|gb|EC885142.2|EC885142
genomic: CGTTGAGCTTCTAGCAAGAGGGCGCCATGACCCATGCGTCGCCCCTCGAGgtaatggcac ... gcttttgcagCTGTTCCTGTGGTGGAATCCATGGCCGCGTTGGTCCTCATGGACCAGCTGA
EST: CGTTGAGCTTCTAGCAAGAGGGCGCCATGACCCATGCGTCGCCCCTCGAG CTGTTCCTGTGGTGGAATCCATGGCCGCGTTGGTCCTCATGGACCAGCTGAEST: gi|76934910|gb|DV174082.1|DV174082
genomic: CGTTGAGCTTCTAGCAAGAGGGCGCCATGACCCATGCGTCGCCCCTCGAGgtaatggcac ... gcttttgcagCTGTTCCTGTGGTGGAATCCATGGCCGCGTTGGTCCTCATGGACCAGCTGA
EST: CGTTGAGCTTCTAGCAAGAGGGCGCCATGACCCATGCGTCGCCCCTCGAG CTGTTCCTGTGGTGGAATCCATGGCCGCGTTGGTCCTCATGGACCAGCTGAEST: gi|149098824|gb|EE184837.2|EE184837
genomic: CGTTGAGCTTCTAGCAAGAGGGCGCCATGACCCATGCGTCGCCCCTCGAGgtaatggcac ... gcttttgcagCTGTTCCTGTGGTGGAATCCATGGCCGCGTTGGTCCTCATGGACCAGCTGA
EST: CGTTGAGCTTTTAGCAAGAGGGCGCCATGACCCATGCGTCGCCCCTCGAG CTGTTCCTGTGGTGGAATCCATGGCCGCGTTGGTCCTCATGGACCAGCTGA
genomic: CGTTGAGCTTCTAGCAAGAGGGCGCCATGACCCATGCGTCGCCCCTCGAGgtaatggcac ... gcttttgcagCTGTTCCTGTGGTGGAATCCATGGCCGCGTTGGTCCTCATGGACCAGCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAAACAGAACACCGTGTCAAGGGAGCGTCAGAACGTTGAGCTTCTAGCAAGAGGGCGCCATGACCCATGCGTCGCCCCTCGAGgtaatggcaccgtgtaatgacgctcctcgctgctagtgctaccgttctttaatttcttccctgcgaggctgcgactgcgatacgaggtttgctcttgacgtggcttttgcag
- - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG