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CATACTTGTAAATAGCTTGGACTGGTCGAAAGTTGGACCAAATCTCCCGTGGCTCGTAGACGCTGGAGGATGTGTTTTGCTGGATTCTTTTgtatcctttacacctctcctactttggtcacaatatgtttctactccataatacttgtctgagtataaataaaacaaacgtttgagaagaatattagtta...
species | Zea mays |
transcript | GRMZM2G024733_T01 |
intron # | 12 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: ATCTCCCGTGGCTCGTAGACGCTGGAGGATGTGTTTTGCTGGATTCTTTT ATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCAEST: gi|71432684|gb|DR813734.1|DR813734
genomic: ATCTCCCGTGGCTCGTAGACGCTGGAGGATGTGTTTTGCTGGATTCTTTTgtatccttta ... tgttgcacagATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCA
EST: ATCTCCCGTGGCTCGTAGACGCTGGAGGATGGGTTTTGCTGGATTCTTTT ATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCAEST: gi|93017162|gb|EB642682.1|EB642682
genomic: ATCTCCCGTGGCTCGTAGACGCTGGAGGATGTGTTTTGCTGGATTCTTTTgtatccttta ... tgttgcacagATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCA
EST: CCCGTGGCTCGTAGACGCTGGAGGATGTGTTTTGCTGGATTCTTTT ATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCAEST: gi|93017161|gb|EB642681.1|EB642681
genomic: CCCGTGGCTCGTAGACGCTGGAGGATGTGTTTTGCTGGATTCTTTTgtatccttta ... tgttgcacagATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCA
EST: CCCGTGGCTCGTAGACGCTGGAGGATGTGTTTTGCTGGATTCTTTT ATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCAEST: gi|71426413|gb|DR807463.1|DR807463
genomic: CCCGTGGCTCGTAGACGCTGGAGGATGTGTTTTGCTGGATTCTTTTgtatccttta ... tgttgcacagATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCA
EST: ATCTCCCGTGGCTCGTAGACGCTGGAGGATGTGTTTTGCTGGATTCTTTT ATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCAEST: gi|60396257|gb|DN229126.1|DN229126
genomic: ATCTCCCGTGGCTCGTAGACGCTGGAGGATGTGTTTTGCTGGATTCTTTTgtatccttta ... tgttgcacagATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCA
EST: ATCTCCCGTGGCTCGTAGACGCTGGAGGATGTGTTTTGCTGGATTCTTTT ATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCAEST: gi|76288324|gb|DV027892.1|DV027892
genomic: ATCTCCCGTGGCTCGTAGACGCTGGAGGATGTGTTTTGCTGGATTCTTTTgtatccttta ... tgttgcacagATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCA
EST: ATCTCCCGTGGCTCGTAGACGCTGGAGGATGTGTTTTGCTGGATTCTTTT ATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCAEST: gi|71764376|gb|DR962313.1|DR962313
genomic: ATCTCCCGTGGCTCGTAGACGCTGGAGGATGTGTTTTGCTGGATTCTTTTgtatccttta ... tgttgcacagATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCA
EST: ATCTCCCGTGGCTCGTAGACGCTGGAGGATGTGTTTTGCTGGATTCTTTT ATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCAEST: gi|78026532|gb|DV494919.1|DV494919
genomic: ATCTCCCGTGGCTCGTAGACGCTGGAGGATGTGTTTTGCTGGATTCTTTTgtatccttta ... tgttgcacagATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCA
EST: ATCTCCCGTGGCTCGTAGACGCTGGAGGATGTGTTTTGCTGGATTCTTTT ATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCA
genomic: ATCTCCCGTGGCTCGTAGACGCTGGAGGATGTGTTTTGCTGGATTCTTTTgtatccttta ... tgttgcacagATCATTCTTCAGTTCCTTTATTTCCATTATCGGAAGCAAAGGGAGCTTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATACTTGTAAATAGCTTGGACTGGTCGAAAGTTGGACCAAATCTCCCGTGGCTCGTAGACGCTGGAGGATGTGTTTTGCTGGATTCTTTTgtatcctttacacctctcctactttggtcacaatatgtttctactccataatacttgtctgagtataaataaaacaaacgtttgagaagaatattagtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA