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TATATAGCAACCCTTTTTTCAGGAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCTgtgagtcttccatatatttaattttcattttcacattgtaactgaacacattgtggttcatgcttactgtgctacatgattaatatcaaaagccatatca...
species | Zea mays |
transcript | GRMZM2G017089_T02 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CCAAAGGCGAATTTATGCACAACATGCT GTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGTEST: gi|31909551|gb|CD650975.1|CD650975
genomic: CCAAAGGCGAATTTCTGCACAACATGCTgtgagtcttc ... ttacgttcagGTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGT
EST: AACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCT GTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGTEST: gi|33091976|gb|CF051970.1|CF051970
genomic: AACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCTgtgagtcttc ... ttacgttcagGTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGT
EST: AACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCT GTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGTEST: gi|37376961|gb|CF625047.1|CF625047
genomic: AACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCTgtgagtcttc ... ttacgttcagGTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGT
EST: AACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCT GTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGTEST: gi|76013075|gb|DT940245.1|DT940245
genomic: AACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCTgtgagtcttc ... ttacgttcagGTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGT
EST: AACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCT GTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGTEST: gi|4967045|gb|AI691809.1|AI691809
genomic: AACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCTgtgagtcttc ... ttacgttcagGTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGT
EST: GTAAA-AAGTTTAACCTTCCCAAAGGCGAATTTCTGCNCANCATGCT GTCGCAGCAGAAACCAATAATCAATTCAATGGCTGTAAATGAGGATGGTGTEST: gi|6538870|gb|AW225009.1|AW225009
genomic: GTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCTgtgagtcttc ... ttacgttcagGTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGT
EST: AACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTTTGCCCAACATGCT GTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGTEST: gi|31406178|gb|CD484910.1|CD484910
genomic: AACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCTgtgagtcttc ... ttacgttcagGTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGT
EST: AACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCT GTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGTEST: gi|71416740|gb|DR803804.1|DR803804
genomic: AACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCTgtgagtcttc ... ttacgttcagGTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGT
EST: AACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCT GTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGTEST: gi|33091991|gb|CF051985.1|CF051985
genomic: AACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCTgtgagtcttc ... ttacgttcagGTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGT
EST: AACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCT GTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGTEST: gi|33093989|gb|CF053983.1|CF053983
genomic: AACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCTgtgagtcttc ... ttacgttcagGTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGT
EST: AACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCT GTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGTEST: gi|5055899|gb|AI734786.1|AI734786
genomic: AACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCTgtgagtcttc ... ttacgttcagGTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGT
EST: AAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCNCAACATGCT GTCGCAGCAGAAACCAATAATCAATTCAATGGCTGTAAATGAGGATGGTGTEST: gi|37382890|gb|CF628417.1|CF628417
genomic: AAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCTgtgagtcttc ... ttacgttcagGTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGT
EST: AACGTAAAGAAGTTTAACCTTCCCAAAGGCG-ATTTCTGCACAACATGCT GTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGTEST: gi|101383542|gb|EB813827.1|EB813827
genomic: AACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCTgtgagtcttc ... ttacgttcagGTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGT
EST: AACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCT GTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGTEST: gi|32933315|gb|CF038127.1|CF038127
genomic: AACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCTgtgagtcttc ... ttacgttcagGTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGT
EST: AACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCT GTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGT
genomic: AACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCTgtgagtcttc ... ttacgttcagGTCGCAGCAGAAAACAATAATCAATTCAATGGCTGTAAATGAGGATGGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATATAGCAACCCTTTTTTCAGGAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCTgtgagtcttccatatatttaattttcattttcacattgtaactgaacacattgtggttcatgcttactgtgctacatgattaatatcaaaagccatatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT