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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAAGACTAATGTTCATGGTGGAGCTGTATCTTTAGGACATCCTCTTGGGTGCAGTGGTGCTCGCATTTTGgttactcttcttggtgtaaattctagtcttaagatgtttgtttacaatctgttttgtttatgttatatgtatatttatatattcctatgtatacccattt...

Basic information

species Zea mays
transcript GRMZM5G830250_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G830250_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os09g07830.3 (Oryza sativa), 5'ss of exon 12
GAAAAGACTAATGTTCATGGTGGAGCTGTATCTTTAGGACATCCTCTTGGGTGCAGTGGTGCTCGCATTTTGgttactcttcttggtgtaaattctagtcttaagatgtttgtttacaatctg-ttttgtttatgttata-tgtatatttat-atattcctatgtatacc-cattt------------
||||| | |||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||| || || |||||||||| || ||  ||| ||||||   |||    | || |||| | | |||| |  | |   ||||| | ||||   |||  |   ||  |            
GAAAAAATTAATGTACATGGAGGAGCTGTGTCTTTAGGACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta-ccttgagatgtccttttgttctatgattttctctctgttttcctatgattttatgagattctgctgttcaggacacctcatccatgttct

upper sequence: GRMZM5G830250_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA14G00760.2 (Glycine max), 5'ss of exon 10
GAAAAGACTAATGTTCATGGTGGAGCTGTATCTTTAGGACATCCTCTTGGGTGCAGTGGTGCTCGCATTTTGgttactcttcttggtgtaaattctagtcttaaga---tgtttgtttacaatctgttttg---tttatgtt-atatgtatatttatatattcctatgtatacccattt--------
|||||    || || ||||||||||||||  |  | || ||||||||||| |||||||||||||||||| |||| || ||| | || |||  | ||    | |  |   || || |||| ||| | |  |    |  ||||| | |  |    || | | ||       | |  |  |         
GAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctcagttcataactttgattttttataatatatagtagaatgcatgttgacagattgccttgtgttttgtagaaaaaagtctatcatagtgct

upper sequence: GRMZM5G830250_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA02G47860.2 (Glycine max), 5'ss of exon 11
GAAAAGACTAATGTTCATGGTGGAGCTGTATCTTTAGGACATCCTCTTGGGTGCAGTGGTGCTCGCATTTTGgttactcttcttggtgtaaattctagtcttaagatgtttgtttacaatctgttttgtttatgttatatgtatatttatatattcctatgtatacccattt-------------------
|||||    ||  | || |||||||||||  |  | || ||||||||||| |||||||||||||||||| |||| || ||| | || |||  | ||    | |  |  || | |||   | |    | | ||  |   ||| || || | | ||| |  ||| |    ||                     
GAAAAAGTAAACTTACACGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctcagttcataac-ttcgattat--tttacaatatata-atagcatgcatgttgaaagattgccttgtgtttgtataaaaaaagtctatcatagtgc

upper sequence: GRMZM5G830250_T01 (Zea mays), 5'ss of exon 11
lower sequence: Vv12s0057g01200.t01 (Vitis vinifera), 5'ss of exon 13
GAAAAGACTAATGTTCATGGTGGAGCTGTATCTTTAGGACATCCTCTTGGGTGCAGTGGTGCTCGCATTTTGgttactcttcttggtgtaaattct------agtcttaagatgtttgttta---caatctgttttgtttatgttatatgtatatttatatattcctatgtatacccattt------
|||||   |||||| |||||||| |||||||| || ||||||||||| || |||||||| || || || ||||| || ||| | || ||| |||        |  ||| | ||| |   | |   |||     ||   || |   | |     ||   || ||| || | | |  |  |        
GAAAAAGTTAATGTGCATGGTGGTGCTGTATCCTTGGGACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGGgtatatttgtgctgaaacctttacatgctctgtaatatcaactgagttaaattgtcaaaaaaaagcatcactacattactttctctgtctctagcttccc

upper sequence: GRMZM5G830250_T01 (Zea mays), 5'ss of exon 11
lower sequence: Vv00s0531g00050.t01 (Vitis vinifera), 5'ss of exon 12
GAAAAGACTAATGTTCATGGTGGAGCTGTATCTTTAGGACATCCTCTTGGGTGCAGTGGTGCTCGCATTTTGgttactcttcttggtgtaaattct---agtcttaagatgtttgtttacaatctgttttgtttatgttatatgtatatttatatattcctatgtatacccattt-------------
||||||   |||||||||||||||||||||||||| ||||||||  | || |||||||||||||| || ||||| ||  |  | || |||  |||    |  ||||   || || |  | ||         ||| | | | ||  |     |||  | | |    || | |  |              
GAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGTTGCAGTGGTGCTCGTATCTTGGTCACATTGTTAGGGgtatgttcatggaagcttatcttggttctgcataagtcaaaagatttttttca-atacaagcaaatacttccttgacaattctctctctctgacctctgat

upper sequence: GRMZM5G830250_T01 (Zea mays), 5'ss of exon 11
lower sequence: Vv18s0089g00590.t01 (Vitis vinifera), 5'ss of exon 7
GAAAAGACTAATGTTCATGGTGGAGCTGTATCTTTAGGACATCCTCTTGGGTGCAGTGGTGCTCGCATTTTGgttactcttcttggtgtaaattc-tagt--cttaagatgtttgtttacaatctgttttgtttatgttatatgtatatttatatattcctatgtatacccattt---------
||||||   ||||||||||||||| || ||||||| ||||||||  | || |||||||||||||| || ||||| ||  |  | || ||| |||| | |   ||||   || || |  | || ||      ||| | | |    || | ||| ||| | |  || | |  || ||         
GAAAAGGTCAATGTTCATGGTGGATCTATATCTTTGGGACATCCAATAGGTTGCAGTGGTGCTCGTATCTTGGTCACATTgttaggggtatattcatggcagcttatcttggttctgcataagctaaaagatttttttca---atacaattaaatacttccttg-acatgcaattctctctcaa