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GTGACTGTCTCTAAGGATGACACTGTTATTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAGgttcgtgcaatattacttttgttgtgctgtcttaaattgcttctaactttctggttctgataatttatggattatggattatggatgttgcag
species | Zea mays |
transcript | GRMZM2G416120_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAG ATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAEST: gi|31349659|gb|CD434016.1|CD434016
genomic: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAGgttcgtgcaa ... gatgttgcagATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAA
EST: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAG ATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTCEST: gi|91875568|gb|EB405525.1|EB405525
genomic: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAGgttcgtgcaa ... gatgttgcagATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTC
EST: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAG ATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTCEST: gi|71425566|gb|DR806758.1|DR806758
genomic: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAGgttcgtgcaa ... gatgttgcagATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTC
EST: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAG ATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTCEST: gi|78078493|gb|DV506906.1|DV506906
genomic: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAGgttcgtgcaa ... gatgttgcagATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTC
EST: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAG ATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTCEST: gi|32929020|gb|CF033832.1|CF033832
genomic: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAGgttcgtgcaa ... gatgttgcagATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTC
EST: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAG ATTAGATCAGCAGTTGAGAACGGCACTTCAGATTATGACAAGGAAAAGCTCEST: gi|18450761|gb|BM429039.1|BM429039
genomic: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAGgttcgtgcaa ... gatgttgcagATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTC
EST: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAG ATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTCEST: gi|87152342|gb|DY397131.1|DY397131
genomic: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAGgttcgtgcaa ... gatgttgcagATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTC
EST: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAG ATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTCEST: gi|32944170|gb|CF048989.1|CF048989
genomic: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAGgttcgtgcaa ... gatgttgcagATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTC
EST: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAG ATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTCEST: gi|32932633|gb|CF037445.1|CF037445
genomic: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAGgttcgtgcaa ... gatgttgcagATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTC
EST: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAG ATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTCEST: gi|32931719|gb|CF036531.1|CF036531
genomic: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAGgttcgtgcaa ... gatgttgcagATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTC
EST: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAG ATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTCEST: gi|6056565|gb|AW090970.1|AW090970
genomic: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAGgttcgtgcaa ... gatgttgcagATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTC
EST: TTCTTGATGGCGCTGGAGACCAAAAGGCTATTGAAGAGAGGGCAGACCAG ATTAGATCAGCAATTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTCEST: gi|21432198|gb|BQ547688.1|BQ547688
genomic: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAGgttcgtgcaa ... gatgttgcagATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTC
EST: TCTTGATGGCGCTGGTAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAG ATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTCEST: gi|32857688|gb|CD997369.1|CD997369
genomic: TCTTGATGGCGCTGG-AGACAAAAAGTCTATTGAAGAGAGGGCAGACCAGgttcgtgcaa ... gatgttgcagATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTC
EST: TCTTGATGGCGCTGGAGACAAAAAGTGCTATTGAAGAGAGGGCAGACCAG ATTAGATCAGCAGGTGAGAACTGCACTTCAGATTATGACAAGGAAAAGCTCEST: gi|33103385|gb|CF063345.1|CF063345
genomic: TCTTGATGGCGCTGGAGACAAAAAGT-CTATTGAAGAGAGGGCAGACCAGgttcgtgcaa ... gatgttgcagATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTC
EST: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAG ATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTCEST: gi|22489874|gb|BU049797.1|BU049797
genomic: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAGgttcgtgcaa ... gatgttgcagATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTC
EST: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAG ATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTC
genomic: TTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAGgttcgtgcaa ... gatgttgcagATTAGATCAGCAGTTGAGAACAGCACTTCAGATTATGACAAGGAAAAGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGACTGTCTCTAAGGATGACACTGTTATTCTTGATGGCGCTGGAGACAAAAAGTCTATTGAAGAGAGGGCAGACCAGgttcgtgcaatattacttttgttgtgctgtcttaaattgcttctaactttctggttctgataatttatggattatggattatggatgttgcag
- - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG