1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CTCAAGACCATCAAGAAGAAGCTGATCCGCAAAGCCCTTGACATGATCAGGAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAGgtaagattgggttttccgcagtgaatgcaagtcacatactctgtaattatctttaaagtactgaaaagatttttctctaatcag
species | Zea mays |
transcript | GRMZM2G141931_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAG ATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCTEST: gi|211354989|gb|FL245114.1|FL245114
genomic: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAGgtaagattgg ... ctctaatcagATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCT
EST: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAG ATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCTEST: gi|211114829|gb|FL096555.1|FL096555
genomic: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAGgtaagattgg ... ctctaatcagATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCT
EST: CTGATGAGTACAGCAACAAGGATAAGACAG ATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCTEST: gi|30306589|gb|CD001262.1|CD001262
genomic: CTGATGAGTACAGCAACAAGGATAAGACAGgtaagattgg ... ctctaatcagATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCT
EST: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAG ATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCTEST: gi|31354312|gb|CD438669.1|CD438669
genomic: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAGgtaagattgg ... ctctaatcagATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCT
EST: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAG ATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCTEST: gi|67017884|gb|CO446633.1|CO446633
genomic: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAGgtaagattgg ... ctctaatcagATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCT
EST: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAG ATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCTEST: gi|50339539|gb|CO534665.1|CO534665
genomic: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAGgtaagattgg ... ctctaatcagATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCT
EST: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAG ATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCTEST: gi|60344141|gb|DN211114.1|DN211114
genomic: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAGgtaagattgg ... ctctaatcagATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCT
EST: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAG ATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCTEST: gi|31356123|gb|CD440480.1|CD440480
genomic: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAGgtaagattgg ... ctctaatcagATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCT
EST: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAG ATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCTEST: gi|20208078|gb|BQ134167.1|BQ134167
genomic: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAGgtaagattgg ... ctctaatcagATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCT
EST: GAAACTTGTTGAAGAATACTCTGATGAGTACAGCAACAAGGATAAGACAG ATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCTEST: gi|26456287|gb|CA827870.1|CA827870
genomic: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAGgtaagattgg ... ctctaatcagATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCT
EST: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAG ATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCTEST: gi|67024193|gb|CO452942.1|CO452942
genomic: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAGgtaagattgg ... ctctaatcagATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCT
EST: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAG ATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCTEST: gi|7227450|gb|AW566091.1|AW566091
genomic: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAGgtaagattgg ... ctctaatcagATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCT
EST: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAG ATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCTEST: gi|21987561|gb|BQ779089.1|BQ779089
genomic: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAGgtaagattgg ... ctctaatcagATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCT
EST: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAG ATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCTEST: gi|67040100|gb|CO466355.1|CO466355
genomic: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAGgtaagattgg ... ctctaatcagATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCT
EST: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAG ATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCT
genomic: GAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAGgtaagattgg ... ctctaatcagATGAAGAGAAAAGCGAGATGGAGGAGAAGAAGGGCCAGTACGCCAAGTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCAAGACCATCAAGAAGAAGCTGATCCGCAAAGCCCTTGACATGATCAGGAAACTTGCTGAAGAAGACCCTGATGAGTACAGCAACAAGGATAAGACAGgtaagattgggttttccgcagtgaatgcaagtcacatactctgtaattatctttaaagtactgaaaagatttttctctaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG