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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtatcaatgtgcaattctcatactgcactgttagtgcagtttctctattattatgccacgaacatgtccaaatcattagagatgtctgtagttg...

Basic information

species Zea mays
transcript GRMZM2G133757_T01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133757_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os11g13694.1 (Oryza sativa), 5'ss of exon 11
GACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtatcaatgtgcaattctcatactgcactgttagtgcagtttctctattattatgccacgaacatgtccaaatcattagagatgtctgtagttg-
|| || || |||||||| || ||||| || ||||||||||| || |||||||| |||||||| |||||||||||| |||||||||||| ||   || |||| |  |  | |     ||  |   | | | |  ||      |  | |  | |    |   |  |   | | | | |||| 
GATAAATACATGCAAAACAGGCTAGTAAGGCTAGTATGTGTTTTCCTACAGAGTCTCATTCGAAACAAGATAATAAATGgtgagtgtaccatcatgtaattttttt-ttaccaaaataccgtcatgtatttggtagatctgcgtgcaattctatttacattctgtattctgtttggttgg

upper sequence: GRMZM2G133757_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA10G00610.1 (Glycine max), 5'ss of exon 11
GACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtatcaa--tgtgcaattctcatactgcactgttagtgcagtttctctattattatgccacgaacatgtccaaatcattagagatgtctgtagttg
|| || || ||||| ||  | || |||||||| || ||||| ||||| || ||||||||||||||||| || ||  ||||||||| || | |  || |  ||| |   | || |   ||| ||   |||    | | |    ||      | |   | |  |  ||| |  |   | ||| 
GATAAATACATGCAGAACCGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAAAGCCTCATTCGGAACAACATTATTAATGgtgagtttacccagttgggacattattgaattgtaacattattgtc-tttaaaaaatgtaggtccctagtaaagaaaagaaaagaagataaattgtttgtt-

upper sequence: GRMZM2G133757_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA02G00750.1 (Glycine max), 5'ss of exon 11
GACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtatcaatgtgca-attctcatactgcactgttagtgcagtttctctattattatgccacgaacatgtccaaatcattagagatgtctgtagttg
|| || || ||||| || || || |||||||| || ||||| ||||| || ||||||||||||||||| || ||  ||||||||| || | |  || | ||| |   | || |   ||| ||   |||    ||| |    |       | |   | |     ||| |  |   | ||| 
GATAAATACATGCAGAACAGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAAAGCCTCATTCGGAACAATATTATTAATGgtgagtttacccagttggacattattgaattgtaacattattgtc-tttaaaaattgtaggtctctagtaaaggaaagaaaggaagataaattgtttgtta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211180687|gb|FK970894.1|FK970894
EST:     TGTCTTTCTACAGAGCCTCATTCGGAACAGGATAATAGATG                         TGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCBTTCTCGCGAA
genomic: TGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtat ... ttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
EST: gi|101395522|gb|EB819689.1|EB819689
EST:     ACTAGTATGTGTCTTTTTACAGAGCCTCATTCGGAACAAGATAATAGATG                         TGCAAGATCTCTTCTTCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
genomic: ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtat ... ttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
EST: gi|74240368|gb|DT648282.1|DT648282
EST:     ATTAGTATGTGTCTTTTTACAGAGCCTCATTCGGAACAAGATAATAGATG                         TGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
genomic: ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtat ... ttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
EST: gi|71761219|gb|DR959156.1|DR959156
EST:     GATAATAGATG                         TGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
genomic: GATAATAGATGgtgagtgtat ... ttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
EST: gi|33095887|gb|CF055881.1|CF055881
EST:     ACTAGTATGTGTCTTTCTACAGAGCCCCATTCGGAACAAGATAATAGATG                         TGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
genomic: ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtat ... ttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
EST: gi|74237045|gb|DT644959.1|DT644959
EST:     ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATG                         TGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
genomic: ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtat ... ttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
EST: gi|76289048|gb|DV028616.1|DV028616
EST:     ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAGGATAATAGATG                         TGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
genomic: ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtat ... ttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
EST: gi|60339490|gb|DN206463.1|DN206463
EST:     ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATG                         TGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
genomic: ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtat ... ttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
EST: gi|71443366|gb|DR824416.1|DR824416
EST:     ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATG                         TGCAAGATCTTTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
genomic: ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtat ... ttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
EST: gi|211180688|gb|FK970895.1|FK970895
EST:     TGTCTTTCTACAGAGCCTCATTCGGAACAGGATAATAGATG                         TGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
genomic: TGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtat ... ttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
EST: gi|60401226|gb|DN234033.1|DN234033
EST:     ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATG                         TGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
genomic: ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtat ... ttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
EST: gi|211180689|gb|FK970896.1|FK970896
EST:     TGTCTTTCTACAGAGCCTCATTCGGAACAGGATAATAGATG                         TGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
genomic: TGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtat ... ttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA