1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
ATTCTTTGTGACACCGTCGGACTCTGTTGCCATTATCGCAGCCAATGCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAGgtaaaaagttctcctccatattgtgctgctaatatgacatctacatatattgttaccataaaaactcccactgtaggctccaggcggtaagcttcactgc...
species | Zea mays |
transcript | GRMZM2G109383_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAG GAGCATGCCAACATCTGCTGCTCTTGATGTTGTTGCAAAGAATTTGAACCTEST: gi|32915471|gb|CF020283.1|CF020283
genomic: GCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAGgtaaaaagtt ... gtaataacagGAGCATGCCAACATCTGCTGCCCTTGATGTTGTTGCAAAGAATTTGAACCT
EST: GCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAG GAGCATGCCAACATCTGCTGCCCTTGATGTTGTTGCAAAGAATTTGAACCTEST: gi|67018536|gb|CO447285.1|CO447285
genomic: GCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAGgtaaaaagtt ... gtaataacagGAGCATGCCAACATCTGCTGCCCTTGATGTTGTTGCAAAGAATTTGAACCT
EST: GCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAG GAGCATGCCAACATCTGCTGCCCTTGATGTTGTTGCAAAGAATTTGAACCTEST: gi|31363628|gb|CD447985.1|CD447985
genomic: GCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAGgtaaaaagtt ... gtaataacagGAGCATGCCAACATCTGCTGCCCTTGATGTTGTTGCAAAGAATTTGAACCT
EST: GCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAG GAGCATGCCAACATCTGCTGCTCTTGATGTTGTTGCAAAGAATTTGAACCTEST: gi|31353391|gb|CD437748.1|CD437748
genomic: GCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAGgtaaaaagtt ... gtaataacagGAGCATGCCAACATCTGCTGCCCTTGATGTTGTTGCAAAGAATTTGAACCT
EST: GCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAG GAGCATGCCAACATCTGCTGCTCTTGATGTTGTTGCAAAGAATTTGAACCTEST: gi|32910896|gb|CF015708.1|CF015708
genomic: GCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAGgtaaaaagtt ... gtaataacagGAGCATGCCAACATCTGCTGCCCTTGATGTTGTTGCAAAGAATTTGAACCT
EST: GCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAG GAGCATGCCAACATCTGCTGCCCTTGATGTTGTTGCAAAGAATTTGAACCTEST: gi|67022599|gb|CO451348.1|CO451348
genomic: GCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAGgtaaaaagtt ... gtaataacagGAGCATGCCAACATCTGCTGCCCTTGATGTTGTTGCAAAGAATTTGAACCT
EST: GCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAG GAGCATGCCAACATCTGCTGCCCTTGATGTTGTTGCAAAGAATTTGAACCTEST: gi|31354675|gb|CD439032.1|CD439032
genomic: GCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAGgtaaaaagtt ... gtaataacagGAGCATGCCAACATCTGCTGCCCTTGATGTTGTTGCAAAGAATTTGAACCT
EST: GCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAG GAGCATGCCAACATCTGCTGCTCTTGATGTTGTTGCAAAGAATTTGAACCTEST: gi|211541124|gb|FL006425.1|FL006425
genomic: GCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAGgtaaaaagtt ... gtaataacagGAGCATGCCAACATCTGCTGCCCTTGATGTTGTTGCAAAGAATTTGAACCT
EST: GCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAG GAGCATGCCAACATCTGCTGCCCTTGATGTTGTTGCAAAGAATTTGAACCT
genomic: GCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAGgtaaaaagtt ... gtaataacagGAGCATGCCAACATCTGCTGCCCTTGATGTTGTTGCAAAGAATTTGAACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCTTTGTGACACCGTCGGACTCTGTTGCCATTATCGCAGCCAATGCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAGgtaaaaagttctcctccatattgtgctgctaatatgacatctacatatattgttaccataaaaactcccactgtaggctccaggcggtaagcttcactgc
- - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG