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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGATAGCTTTCTTTTACTGGACATCTAATTTTCATCGTTTCGAATTCTTTAGACGGTTGAGGCTTCCTGAATAGTTCCCATCTAAAAGTAGTTAAAGgtaaactgcatttcatctggtactggtttactgtttggcattattattctaccataaagtactccagtattgttatattttaattttactgttgtgtgtt...

Basic information

species Zea mays
transcript GRMZM2G079428_T04
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G079428_T02 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os10g34400.2 (Oryza sativa), 5'ss of exon 11
---CTGTGATAGCTTTCTTTTACTGGACATCTAATTTTCATCGTTTCGAATTCTTTAGACGGTTGAGGCTTCCTGAATAGTTCCCATCTAAAAGTAGTTAAAGgtaaactgcatttcatctggtactggtttactgtttggcattattattctaccataaagtactccagtattgttatattttaattttactgttgtgtgtt-
   |||||||||||||||||||||||||||| || ||||||| ||| ||||||||||| ||||||| ||||||||| ||||| |     | ||  |||| |||||||| || ||||  |||     |||   |    ||    |  | |    | | | |  |  || | | | |    || ||    || || |  |   || 
GTCCTGTGATAGCTTTCTTTTACTGGACATCAAACTTTCATCTTTTTGAATTCTTTAGGCGGTTGAAGCTTCCTGATTAGTTTCAG---AGAATCAGTTGAAGgtaaa-tgaattttgtctttgtgtggcccagctgttattgtgctgaagtaatcttcatatgttctattctcgcaccatattgcacttgctatgtttaatta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|61236809|gb|DN586535.1|DN586535
EST:     TTTAGACGGTTGAGGCTTCCTGAATAGTTCCCATCTAAAAGTAGTTAAAG                         GCCATTCTGATTTTTGCATAGTTGCATTTGGAGCCAACAGGAGTTGCCTGG
genomic: TTTAGACGGTTGAGGCTTCCTGAATAGTTCCCATCTAAAAGTAGTTAAAGgtaaactgca ... ctgttagcagGCCATTCTGATTTTTGCATAGTTGCATTTGGAGCCAACAGGAGTTGCCTGG
EST: gi|194716856|gb|FK934015.1|FK934015
EST:     TTTAGACGGTTGAGGCTTCCTGAATAGTTCCCATCTAAAAGTAGTTAAAG                         GCCATTCTGATTTTTGCATAGTTGCATTTGGAGCCAACAGGAGTTGCCTGG
genomic: TTTAGACGGTTGAGGCTTCCTGAATAGTTCCCATCTAAAAGTAGTTAAAGgtaaactgca ... ctgttagcagGCCATTCTGATTTTTGCATAGTTGCATTTGGAGCCAACAGGAGTTGCCTGG