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CTATTGGGCCAACACAGCAAGCTCTGCTCCTGTAATTCATGGCAAAGTGACCCCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAATGGATACAGgtttgtcttctttttactctgctttgtatgcactgtttgccctccaccttttcttctatattgcgttgtttctgtttgcatttttgtgcacaccatattt...
species | Zea mays |
transcript | GRMZM2G074373_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CCCCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAATGGATACAG GATGAACGTGAACTCAAAAGGCAAAAAAGAAAACAGTCTAATAGGGAGTCTEST: gi|31358760|gb|CD443117.1|CD443117
genomic: CCCCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAATGGATACAGgtttgtcttc ... tgtggttcagGATGAACGTGAACTCAAAAGGCAAAAAAGAAAACAGTCTAATAGGGAGTCT
EST: CCCCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAATGGATACAG GATGAACGTGAACTCAAAAGGCAAAAAAGAAAACAGTCTAATAGGGAGTCTEST: gi|149110852|gb|EE294350.2|EE294350
genomic: CCCCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAATGGATACAGgtttgtcttc ... tgtggttcagGATGAACGTGAACTCAAAAGGCAAAAAAGAAAACAGTCTAATAGGGAGTCT
EST: AACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAATGGATACAG GATGAACGTGAACTCAAAAGGCAAAAAAGAAAACAGTCTAATAGGGAGTCTEST: gi|211028676|gb|FL452179.1|FL452179
genomic: AACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAATGGATACAGgtttgtcttc ... tgtggttcagGATGAACGTGAACTCAAAAGGCAAAAAAGAAAACAGTCTAATAGGGAGTCT
EST: CAATGGATACAG GATGAACGTGAACTCAAAAGGCAAAAAAGAAAACAGTCTAATAGGGAGTCTEST: gi|71318159|gb|DR795842.1|DR795842
genomic: CAATGGATACAGgtttgtcttc ... tgtggttcagGATGAACGTGAACTCAAAAGGCAAAAAAGAAAACAGTCTAATAGGGAGTCT
EST: CCCCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAATGGATACAG GATGAACGTGAACTCAAAAGGCAAAAAAGAAAACAGTCTAATAGGGAGTCTEST: gi|60345262|gb|DN212235.1|DN212235
genomic: CCCCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAATGGATACAGgtttgtcttc ... tgtggttcagGATGAACGTGAACTCAAAAGGCAAAAAAGAAAACAGTCTAATAGGGAGTCT
EST: CCCCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAATGGATACAG GATGAACGTGAACTCAAAAGGCAAAAAAGAAAACAGTCTAATAGGGAGTCTEST: gi|60399438|gb|DN232250.1|DN232250
genomic: CCCCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAATGGATACAGgtttgtcttc ... tgtggttcagGATGAACGTGAACTCAAAAGGCAAAAAAGAAAACAGTCTAATAGGGAGTCT
EST: CCCCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAATGGATACAG GATGAACGTGAACTCAAAAGGCAAAAAAGAAAACAGTCTAATAGGGAGTCTEST: gi|89251780|gb|DY623566.1|DY623566
genomic: CCCCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAATGGATACAGgtttgtcttc ... tgtggttcagGATGAACGTGAACTCAAAAGGCAAAAAAGAAAACAGTCTAATAGGGAGTCT
EST: CCCCAACAACAGTTCCAGGGGCTGTGGTCCCAGCCGAGCAATGGATACAG GATGAACGTGAACTCAAAAGGCAAAAAAGAAAACAGTCTAATAGGGAGTCTEST: gi|110190661|gb|EC872559.1|EC872559
genomic: CCCCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAATGGATACAGgtttgtcttc ... tgtggttcagGATGAACGTGAACTCAAAAGGCAAAAAAGAAAACAGTCTAATAGGGAGTCT
EST: CCCCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAATGGATACAG GATGAACGTGAATTCAAAAGGCAAAAAAGAAAACAGTCTAATAGGGAGTCTEST: gi|40485763|gb|CK394726.1|CK394726
genomic: CCCCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAATGGATACAGgtttgtcttc ... tgtggttcagGATGAACGTGAACTCAAAAGGCAAAAAAGAAAACAGTCTAATAGGGAGTCT
EST: CCCCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAATGGATACAG GATGAACGTGAACTCAAAAGGCAAAAAAGAAAACAGTCTAATAGGGAGTCTEST: gi|24766396|gb|CA401550.1|CA401550
genomic: CCCCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAATGGATACAGgtttgtcttc ... tgtggttcagGATGAACGTGAACTCAAAAGGCAAAAAAGAAAACAGTCTAATAGGGAGTCT
EST: CCCCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAATGGATACAG GATGAACGTGAACTCAAAAGGCAAAAAAGAAAACAGTCTAATAGGGAGTCT
genomic: CCCCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAATGGATACAGgtttgtcttc ... tgtggttcagGATGAACGTGAACTCAAAAGGCAAAAAAGAAAACAGTCTAATAGGGAGTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATTGGGCCAACACAGCAAGCTCTGCTCCTGTAATTCATGGCAAAGTGACCCCAACAACAGTTCCAGGGGCTGTGGTCCCAGCAGAGCAATGGATACAGgtttgtcttctttttactctgctttgtatgcactgtttgccctccaccttttcttctatattgcgttgtttctgtttgcatttttgtgcacaccatattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctccacc