1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGATCCAATGTGCAATGCTTGTGAGATGGCTGTGGTATGGATGCAGAACCAACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaactgacccagagcgcaaggcgtttctgtaccatttagcatgctgctttgcttaactatttcactatgacag
species | Zea mays |
transcript | GRMZM2G065757_T02 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAG CTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGCEST: gi|67017226|gb|CO445975.1|CO445975
genomic: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaa ... actatgacagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGC
EST: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAG CTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGCEST: gi|33096169|gb|CF056163.1|CF056163
genomic: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaa ... actatgacagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGC
EST: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAG CTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGCEST: gi|211092713|gb|FK945553.1|FK945553
genomic: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaa ... actatgacagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGC
EST: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAG CTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCTGTGGACTGTGGCEST: gi|31354952|gb|CD439309.1|CD439309
genomic: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaa ... actatgacagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGC
EST: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAG CTTTGCGAGCGTCTTCCGAGTCCAATGGGAGAATCAGCCGTGGACTGTGGCEST: gi|32918238|gb|CF023050.1|CF023050
genomic: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaa ... actatgacagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGC
EST: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAG CTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGCEST: gi|16919046|gb|BM074015.1|BM074015
genomic: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaa ... actatgacagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGC
EST: AAGACACAGGAGCTCATCCTGAACTACATTAATCAG CTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGCEST: gi|211361839|gb|FL432808.1|FL432808
genomic: AAGACACAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaa ... actatgacagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGC
EST: GAGCTCATCCTGAACTACATTAATCAG CTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCTGTGGACTGTGGCEST: gi|21621076|gb|BQ619082.1|BQ619082
genomic: GAGCTCATCCTGAACTACATTAATCAGgcgagcttaa ... actatgacagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGC
EST: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAG CTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGCEST: gi|116816042|gb|EC858742.1|EC858742
genomic: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaa ... actatgacagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGC
EST: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAG CTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGCEST: gi|33096356|gb|CF056350.1|CF056350
genomic: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaa ... actatgacagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGC
EST: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAG CTNTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGCEST: gi|60337171|gb|DN204144.1|DN204144
genomic: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaa ... actatgacagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGC
EST: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAG CTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCTGTGGACTGTGGC
genomic: AACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaa ... actatgacagCTTTGCGAGCGTCTTCCGAGTCCGATGGGAGAATCAGCCGTGGACTGTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATCCAATGTGCAATGCTTGTGAGATGGCTGTGGTATGGATGCAGAACCAACTTGCCCAGAACAAGACACAGGAGCTCATCCTGAACTACATTAATCAGgcgagcttaactgacccagagcgcaaggcgtttctgtaccatttagcatgctgctttgcttaactatttcactatgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA