1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
GTTATGGTGGCTACTGTACGTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAGgtgattacaatacatatcatacatgatttgtggatcatagattccttcaagaactgattctatatgatttctgtgtgaag
species | Zea mays |
transcript | AC196426.3_FGT007 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAG GAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTTEST: gi|211043098|gb|FK967329.1|FK967329
genomic: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAGgtgattacaa ... ctgtgtgaagGAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTT
EST: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAG GAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTTEST: gi|211454906|gb|FK967300.1|FK967300
genomic: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAGgtgattacaa ... ctgtgtgaagGAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTT
EST: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAG GAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTTEST: gi|211457037|gb|FK967315.1|FK967315
genomic: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAGgtgattacaa ... ctgtgtgaagGAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTT
EST: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAG GAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTTEST: gi|211454909|gb|FK967303.1|FK967303
genomic: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAGgtgattacaa ... ctgtgtgaagGAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTT
EST: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAG GAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTTEST: gi|211454913|gb|FK967307.1|FK967307
genomic: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAGgtgattacaa ... ctgtgtgaagGAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTT
EST: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAG GAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTTEST: gi|211454904|gb|FK967298.1|FK967298
genomic: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAGgtgattacaa ... ctgtgtgaagGAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTT
EST: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAG GAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTTEST: gi|211043097|gb|FK967328.1|FK967328
genomic: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAGgtgattacaa ... ctgtgtgaagGAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTT
EST: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAG GAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTTEST: gi|211457040|gb|FK967318.1|FK967318
genomic: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAGgtgattacaa ... ctgtgtgaagGAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTT
EST: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAG GAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTTEST: gi|211457033|gb|FK967311.1|FK967311
genomic: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAGgtgattacaa ... ctgtgtgaagGAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTT
EST: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAG GAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTTEST: gi|211454911|gb|FK967305.1|FK967305
genomic: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAGgtgattacaa ... ctgtgtgaagGAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTT
EST: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAG GAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTTEST: gi|211457034|gb|FK967312.1|FK967312
genomic: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAGgtgattacaa ... ctgtgtgaagGAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTT
EST: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAG GAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTTEST: gi|211457046|gb|FK967324.1|FK967324
genomic: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAGgtgattacaa ... ctgtgtgaagGAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTT
EST: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAG GAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTT
genomic: GTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAGgtgattacaa ... ctgtgtgaagGAATGGCAACAATTTGAGGAGGCTGTCCAACATGACTTTGTTACTGGGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTATGGTGGCTACTGTACGTTGTGAGGAAATTGGTAATGAGAAAGTTACCAGCTTTATAGCTGATGAGgtgattacaatacatatcatacatgatttgtggatcatagattccttcaagaactgattctatatgatttctgtgtgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT