1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCACTCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGAGGGTTGCACTTCGCGTGAAAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAGgtatgtttttgcaatgcttgataaagcattcattttagtttgtagcacgtgaaacttaagtctatgtttatgggcag
species | Zea mays |
transcript | GRMZM2G179308_T03 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GCACTTCGCGTGAAAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAG AACCTGGTGATGCAAAATGTGGATCAAGCTGCAGGAGATTTCATTGACCTTEST: gi|32787565|gb|CD936467.1|CD936467
genomic: GCACTTCGCGTGAAAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAGgtatgttttt ... ttatgggcagAACCTGGTGATGCAAAATGTGGATCAAGCTGCAGGAGATTTCATTGACCTT
EST: GCACTTCGCGTGAAAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAG AATCTGGTGATGCAAAATGTGGATCAGGCTGCAGGAGATTTCATTGACCTTEST: gi|45568628|gb|CK986157.1|CK986157
genomic: GCACTTCGCGTGAAAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAGgtatgttttt ... ttatgggcagAACCTGGTGATGCAAAATGTGGATCAAGCTGCAGGAGATTTCATTGACCTT
EST: GCACTTCGCGTGAAAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAG AATCTGGTGATGCAAAATGTGGATCAGGCTGCAGGAGATTTCATTGACCTTEST: gi|76015336|gb|DT942506.1|DT942506
genomic: GCACTTCGCGTGAAAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAGgtatgttttt ... ttatgggcagAACCTGGTGATGCAAAATGTGGATCAAGCTGCAGGAGATTTCATTGACCTT
EST: GCACTTCGCGTGAAAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAG AACCTGGTGATGCAAAATGTGGATCAAGCTGCAGGAGATTTCATTGACCTTEST: gi|71756384|gb|DR954321.1|DR954321
genomic: GCACTTCGCGTGAAAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAGgtatgttttt ... ttatgggcagAACCTGGTGATGCAAAATGTGGATCAAGCTGCAGGAGATTTCATTGACCTT
EST: GCACTTCGCGTGAAAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAG AACCTGGTGATGCAAAATGTGGATCAAGCTGCAGGAGATTTCATTGACCTTEST: gi|211191418|gb|FL472415.1|FL472415
genomic: GCACTTCGCGTGAAAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAGgtatgttttt ... ttatgggcagAACCTGGTGATGCAAAATGTGGATCAAGCTGCAGGAGATTTCATTGACCTT
EST: GCACTTCGCGTGAAAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAG AACCTGGTGATGCAAAATGTGGATCAAGCTGCAGGAGATTTCATTGACCTTEST: gi|211241890|gb|FL451479.1|FL451479
genomic: GCACTTCGCGTGAAAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAGgtatgttttt ... ttatgggcagAACCTGGTGATGCAAAATGTGGATCAAGCTGCAGGAGATTTCATTGACCTT
EST: GCACTTCGCGTGAAAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAG AACCTGGTGATGCAAAATGTGGATCAAGCTGCAGGAGATTTCATTGACCTTEST: gi|60357877|gb|DN224850.1|DN224850
genomic: GCACTTCGCGTGAAAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAGgtatgttttt ... ttatgggcagAACCTGGTGATGCAAAATGTGGATCAAGCTGCAGGAGATTTCATTGACCTT
EST: GCACTTCGCGTGAAAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAG AACCTGGTGATGCAAAATGTGGATCAAGCTGCAGGAGATTTCATTGACCTTEST: gi|33096467|gb|CF056461.1|CF056461
genomic: GCACTTCGCGTGAAAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAGgtatgttttt ... ttatgggcagAACCTGGTGATGCAAAATGTGGATCAAGCTGCAGGAGATTTCATTGACCTT
EST: GCACTTCGCGTGAAAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAG AACCTGGTGATGCAAAATGTGGATCAAGCTGCAGGAGATTTCATTGACCTTEST: gi|60347445|gb|DN214418.1|DN214418
genomic: GCACTTCGCGTGAAAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAGgtatgttttt ... ttatgggcagAACCTGGTGATGCAAAATGTGGATCAAGCTGCAGGAGATTTCATTGACCTT
EST: GCACTTCGCGTGAAAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAG AACCTGGTGATGCAAAATGTGGATCAAGCTGCAGGAGATTTCATTGACCTT
genomic: GCACTTCGCGTGAAAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAGgtatgttttt ... ttatgggcagAACCTGGTGATGCAAAATGTGGATCAAGCTGCAGGAGATTTCATTGACCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACTCTGACAAATACATCAGAAAAGGACGCCTGAATTGGCCTGAGGGTTGCACTTCGCGTGAAAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAGgtatgtttttgcaatgcttgataaagcattcattttagtttgtagcacgtgaaacttaagtctatgtttatgggcag
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