1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCTGCCGTTCTTGCTCCGTCTACAAAGGGCGAGAAGAAAGTGAGGAGCATCTTAGAGGACCTTTGCGGCAATGTCCATAGgtgattcttcagtgcttggactgctgcagtaactactttgttaagtcatatagtatctttttttttcccactgaaacgcaacatttggattacag
species | Zea mays |
transcript | GRMZM2G177912_T02 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAGAAGAAAGTGAGGAGCATTTTAGAGGACCTTTGCGGCAATGTCCATAG TATTTATTGGAAAGGCGAAGATGACGTGGCAGTTGCTGGTTTGGGAGGTGAEST: gi|76288289|gb|DV027857.1|DV027857
genomic: GAGAAGAAAGTGAGGAGCATCTTAGAGGACCTTTGCGGCAATGTCCATAGgtgattcttc ... tggattacagTATTTATTGGAAAGGCGAAGATGACGTGGCAGTTGCTGGTCTGGGAGGTGA
EST: GAGAAGAAAGTGAGGAGCATCTTAGAGGACCTTTGCGGCAATGTCCATAG TATTTATTGGAAAGGCGAAGATGACGTGGCAGTTGCTGGTCTGGGAGGTGAEST: gi|211233368|gb|FL465080.1|FL465080
genomic: GAGAAGAAAGTGAGGAGCATCTTAGAGGACCTTTGCGGCAATGTCCATAGgtgattcttc ... tggattacagTATTTATTGGAAAGGCGAAGATGACGTGGCAGTTGCTGGTCTGGGAGGTGA
EST: GAGAAGAAAGTAAGGAGCATCTTAGAGGACCTTTGCGGCAATGTCCATAG TATTTATTGGAAAGGCGAAGATGACGTGGCAGTTGCTGGTCTGGAAGGTGAEST: gi|60338311|gb|DN205284.1|DN205284
genomic: GAGAAGAAAGTGAGGAGCATCTTAGAGGACCTTTGCGGCAATGTCCATAGgtgattcttc ... tggattacagTATTTATTGGAAAGGCGAAGATGACGTGGCAGTTGCTGGTCTGGGAGGTGA
EST: GAGAAGAAAGTGAGGAGCATCTTAGAGGACCTTTGCGGCAATGTCCATAG TATTTATTGGAAAGGCGAAGATGACGTGGCAGTTGCTGGTCTGGGAGGTGAEST: gi|60340364|gb|DN207337.1|DN207337
genomic: GAGAAGAAAGTGAGGAGCATCTTAGAGGACCTTTGCGGCAATGTCCATAGgtgattcttc ... tggattacagTATTTATTGGAAAGGCGAAGATGACGTGGCAGTTGCTGGTCTGGGAGGTGA
EST: GAGAAGAAAGTGAGGAGCATCTTAGAGGACCTTTGCGGCAATGTCCATAG TATTTATTGGAAAGGCGAAGATGACGTGGCAGTTGCTGGTCTGGGAGGTGAEST: gi|211430021|gb|FL445207.1|FL445207
genomic: GAGAAGAAAGTGAGGAGCATCTTAGAGGACCTTTGCGGCAATGTCCATAGgtgattcttc ... tggattacagTATTTATTGGAAAGGCGAAGATGACGTGGCAGTTGCTGGTCTGGGAGGTGA
EST: GAGAAGAAAGTAAGGAGCATCTTAGAGGACCTTTGCGGCAATGTCCATAG TATTTATTGGAAAGGCGAAGATGACGTGGCAGTTGCTGGTCTGGGAGGTGAEST: gi|40337132|gb|CK371202.1|CK371202
genomic: GAGAAGAAAGTGAGGAGCATCTTAGAGGACCTTTGCGGCAATGTCCATAGgtgattcttc ... tggattacagTATTTATTGGAAAGGCGAAGATGACGTGGCAGTTGCTGGTCTGGGAGGTGA
EST: GAGAAGAAAGTGAGGAGCATCTTAGAGGACCTTTGCGGCAATGTCCATAG TATTTATTGGAAAGGCGAAGATGACGTGGCAGTTGCTGGTCTGGGAGGTGAEST: gi|71327561|gb|DR800389.1|DR800389
genomic: GAGAAGAAAGTGAGGAGCATCTTAGAGGACCTTTGCGGCAATGTCCATAGgtgattcttc ... tggattacagTATTTATTGGAAAGGCGAAGATGACGTGGCAGTTGCTGGTCTGGGAGGTGA
EST: GAGAAGAAAGTGAGGAGCATCTTAGAGGACCTTTGCGGCAATGTCCATAG TATTTATTGGAAAGGCGAAGATGACGTGGCAGTTGCTGGTCTGGGAGGTGAEST: gi|78120130|gb|DV538514.1|DV538514
genomic: GAGAAGAAAGTGAGGAGCATCTTAGAGGACCTTTGCGGCAATGTCCATAGgtgattcttc ... tggattacagTATTTATTGGAAAGGCGAAGATGACGTGGCAGTTGCTGGTCTGGGAGGTGA
EST: GAGAAGAAAGTGAGGAGCATCTTAGAGGACCTTTGCGGCAATGTCCATAG TATTTATTGGAAAGGCGAAGATGACGTGGCAGTTGCTGGTCTGGGAGGTGA
genomic: GAGAAGAAAGTGAGGAGCATCTTAGAGGACCTTTGCGGCAATGTCCATAGgtgattcttc ... tggattacagTATTTATTGGAAAGGCGAAGATGACGTGGCAGTTGCTGGTCTGGGAGGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGCCGTTCTTGCTCCGTCTACAAAGGGCGAGAAGAAAGTGAGGAGCATCTTAGAGGACCTTTGCGGCAATGTCCATAGgtgattcttcagtgcttggactgctgcagtaactactttgttaagtcatatagtatctttttttttcccactgaaacgcaacatttggattacag
- - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA