1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCCAGATTGCACCCATTGTGGCGAAAACTCCGTTTTCACAGAAGAAGACTTTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtatgtgaatggatgacgcaatgcagatcacattaaagaatgatattgaaaccagtggccttatctactgttacatctactgcag
species | Zea mays |
transcript | GRMZM2G160842_T02 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAG GCAGCACCAAGCGTGAACGTACTCCCAGAGAGCGCGCGGATCACTTGCAGAEST: gi|211251414|gb|FL479560.1|FL479560
genomic: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtatgtgaat ... tctactgcagGCAGCACCAAGCGTGAACGTACTCCCAGAGAGCGCGCGGATCACTTGCAGA
EST: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAG GCAGCACCAAGCGTGAACGTACTCCCAGAGAGCGCGCGGATCACTTGCAGAEST: gi|166599689|gb|EG300720.1|EG300720
genomic: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtatgtgaat ... tctactgcagGCAGCACCAAGCGTGAACGTACTCCCAGAGAGCGCGCGGATCACTTGCAGA
EST: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAG GCAGCAGCAAGCGTEST: gi|211494115|gb|FL300919.1|FL300919
genomic: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtatgtgaat ... tctactgcagGCAGCACCAAGCGT
EST: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAG GCAGCACCAAGCGTGAACGTACTTCCAGAGAGCGCGCGGATCACTTGCAGAEST: gi|89249844|gb|DY621630.1|DY621630
genomic: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtatgtgaat ... tctactgcagGCAGCACCAAGCGTGAACGTACTCCCAGAGAGCGCGCGGATCACTTGCAGA
EST: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAG GCAGCACCAAGCGTGAACGTACTCCCAGAGAGCGCGCGGATCACTTGCAGAEST: gi|16746025|gb|BM032455.1|BM032455
genomic: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtatgtgaat ... tctactgcagGCAGCACCAAGCGTGAACGTACTCCCAGAGAGCGCGCGGATCACTTGCAGA
EST: TTCAGAAGTTTGACTATGAGAGCTTCACACAGNCACCAATGTCTGACAAG GCAGCACCAAGCGTGAACGTACTCCCAGAGAGCGCGCGGATCACTTGCAGAEST: gi|78106503|gb|DV524921.1|DV524921
genomic: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtatgtgaat ... tctactgcagGCAGCACCAAGCGTGAACGTACTCCCAGAGAGCGCGCGGATCACTTGCAGA
EST: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAG GCAGCACCAAGCGTGAACGTACTCCCAGAGAGCGCGCGGATCACTTGCAGAEST: gi|18384856|gb|BM418055.1|BM418055
genomic: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtatgtgaat ... tctactgcagGCAGCACCAAGCGTGAACGTACTCCCAGAGAGCGCGCGGATCACTTGCAGA
EST: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGACAAG GCAGCACCAAGCGCGAACGTACTCCCAGAGAGCGCGCGGATCACTTGCAGA
genomic: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtatgtgaat ... tctactgcagGCAGCACCAAGCGTGAACGTACTCCCAGAGAGCGCGCGGATCACTTGCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAGATTGCACCCATTGTGGCGAAAACTCCGTTTTCACAGAAGAAGACTTTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtatgtgaatggatgacgcaatgcagatcacattaaagaatgatattgaaaccagtggccttatctactgttacatctactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT