1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CTACAACAGTAACAAGTCAAACCTCAAGTTGTATGTTAGGAGAGTTTTCATCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAGgtactgtattactgtttcaagaaacgcgtactattcaattcaatctgatgtcatagcaggctaaaccttacagtggttttatctgtag
species | Zea mays |
transcript | GRMZM2G141931_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAG GGTATTGTTGACTCGGACACGCTGCCCCTGAATGTGTCACGAGAAATGCTTEST: gi|31354312|gb|CD438669.1|CD438669
genomic: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAGgtactgtatt ... ttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTT
EST: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAG GGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTTEST: gi|32847287|gb|CD986968.1|CD986968
genomic: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAGgtactgtatt ... ttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTT
EST: ACCTGAGCTTTTTGAAG GGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTTEST: gi|67017884|gb|CO446633.1|CO446633
genomic: ACCTGAGCTTTTTGAAGgtactgtatt ... ttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTT
EST: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAG GGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTTEST: gi|60344141|gb|DN211114.1|DN211114
genomic: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAGgtactgtatt ... ttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTT
EST: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAG GGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTTEST: gi|31356123|gb|CD440480.1|CD440480
genomic: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAGgtactgtatt ... ttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTT
EST: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAG GGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTTEST: gi|21987199|gb|BQ778727.1|BQ778727
genomic: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAGgtactgtatt ... ttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTT
EST: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAG GGTATTGTTGACTCGGACACCCTGCCCCTGAACGTGTCACGAGAAATGCTTEST: gi|26456287|gb|CA827870.1|CA827870
genomic: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAGgtactgtatt ... ttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTT
EST: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAG GGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTTEST: gi|7227450|gb|AW566091.1|AW566091
genomic: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAGgtactgtatt ... ttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTT
EST: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAG GGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTTEST: gi|21987561|gb|BQ779089.1|BQ779089
genomic: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAGgtactgtatt ... ttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTT
EST: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAG GGTATTGTTGACTCGGACACCCTGCCCCTGAACGTGTCACGAGAAATGCTTEST: gi|67040100|gb|CO466355.1|CO466355
genomic: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAGgtactgtatt ... ttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTT
EST: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAG GGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTT
genomic: TCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAGgtactgtatt ... ttatctgtagGGTATTGTTGACTCGGACACGCTGCCCCTGAACGTGTCACGAGAAATGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACAACAGTAACAAGTCAAACCTCAAGTTGTATGTTAGGAGAGTTTTCATCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAGgtactgtattactgtttcaagaaacgcgtactattcaattcaatctgatgtcatagcaggctaaaccttacagtggttttatctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG