Sequence
atgc intronic sequence ATGC exonic sequenceCCACAAGGAAATTCATCGATTCTGTTAAGATACCCTATCATGCCCCTTCTTTCGGAGGCTGTGAGAGCATAATTGATCAGCCTGCTATCATGTCCTACTGgtaagaacttaacatttgtggtattgagacattcaaaacaaatgacatacttgtgctacattttgag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G113873_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os03g25940.2 (Oryza sativa), 5'ss of exon 10
CCACAAGGAAATTCATCGATTCTGTTAAGATACCCTATCATGCCCCTTCTTTCGGAGGCTGTGAGAGCATAATTGATCAGCCTGCTATCATGTCCTACTGgtaagaacttaaca---tttgtggtattgagacattcaa--aacaaatgacatacttgtgctacattttgag---------
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CTACTAGGAGATTTATTGATTCTGTTAAGATACCCTATCATGCCCCATCATTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGgtatggactgttcatattttgtcacattcagataatcaatcaatcaaaaagaacatgttgctgagttatgaatcattacag
upper sequence: GRMZM2G113873_T02 (Zea mays), 5'ss of exon 10
lower sequence: AT3G01120.1 (Arabidopsis thaliana), 5'ss of exon 10
CCACAAGGAAATTCATCGATTCTGTTAAGATACCCTATCATGCCCCTTCTTTCGGAGGCTGTGAGAGCATAATTGATCAGCCTGCTATCATGTCCTACTGgtaagaacttaacatttgtgg-tattgagacattcaaaacaaatgacatacttgtgctacatt-ttgag-------------------------------------
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CGACAATCAAGTTTGTGGATTCTCTAAAGATTCCTTACATTGCACCATCCTTCGGTGGCTGCGAAAGCATTGTTGACCAACCTGCTATCATGTCCTACTGgtatgtctttggcaaaatcgaacaaagttatctttgattccatatgcttccgtctttgacaaaatcgaacaaatttccgatttctaatgggtggttttgatttcag
upper sequence: GRMZM2G113873_T02 (Zea mays), 5'ss of exon 10
lower sequence: Vv14s0108g01110.t01 (Vitis vinifera), 5'ss of exon 10
CCACAAGGAAATTCATCGATTCTGTTAAGATACCCTATCATGCCCCTTCTTTCGGAGGCTGTGAGAGCATAATTGATCAGCCTGCTATCATGTCCTACTGgtaagaac-ttaacatttgtggtattgagacattcaaaacaaatgacatacttgtgctacattttgag----------------------------------------------------------------------------------------------
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CCACCATCAAGTTTGTTGATGCATTGAAAATCCCTTATATTGCCCCATCCTTCGGAGGCTGTGAGAGCATTGTTGATCAGCCTGCGATTATGTCTTACTGgtattccccttcattcctctcatgtagtagcat---aaatgaatacccctgtttggcattggtctcactgaataatcacaagacttgcacattgggtttcaccttgtccttgttacttggttctgattcttttaattgaattgttcgtgctttccaaaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60395589|gb|DN228459.1|DN228459EST: TTCGGAGGCTGTGAGAGCATAATTGATCAGCCTGCTATCATGTCCTACTG CTCTGTGGCTTATAAACAGGGATTCAAAGGAGCAGAGGGACATCTATGGGA
genomic: TTCGGAGGCTGTGAGAGCATAATTGATCAGCCTGCTATCATGTCCTACTGgtaagaactt ... acattttgagCTCTGTGGCTTATAAACAGGGATTCAAAGGAGCAGAGGGACATCTATGGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCACAAGGAAATTCATCGATTCTGTTAAGATACCCTATCATGCCCCTTCTTTCGGAGGCTGTGAGAGCATAATTGATCAGCCTGCTATCATGTCCTACTGgtaagaacttaacatttgtggtattgagacattcaaaacaaatgacatacttgtgctacattttgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA