1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GAAGATGGCCTTCATGCTTCATCTAAGATTGCTGCATTTGATTTTGATGGGTGCCTTGCCAATACCAGTATGAAGAGgtattgtgtttcataagacatggttttactctaaatggtattctagatgcttccactgaatattatttcgcctattctgttgtttattatggagacactt...
species | Zea mays |
transcript | GRMZM2G111510_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ACCAGTATGAAGAG GGTTGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATTEST: gi|78088731|gb|DV517124.1|DV517124
genomic: ACCAGTATGAAGAGgtattgtgtt ... gctcgtccagGGTTGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATT
EST: ATTGCTGCATTTGATTTTGATGGGTGCCTTGCCAATACCAGTATGAAGAG GGTTGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATTEST: gi|60359551|gb|DN226524.1|DN226524
genomic: ATTGCTGCATTTGATTTTGATGGGTGCCTTGCCAATACCAGTATGAAGAGgtattgtgtt ... gctcgtccagGGTTGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATT
EST: ATTGCTGCATTTGATTTTGATGGGTGCCTTGCCAATACCAGTATGAAGAG GGTTGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATTEST: gi|71432125|gb|DR813175.1|DR813175
genomic: ATTGCTGCATTTGATTTTGATGGGTGCCTTGCCAATACCAGTATGAAGAGgtattgtgtt ... gctcgtccagGGTTGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATT
EST: ATTGCTGCATTTGATTTTGATGGGTGCCTTGCCAATACCAGTATGAAGAG GGTTGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATTEST: gi|60341580|gb|DN208553.1|DN208553
genomic: ATTGCTGCATTTGATTTTGATGGGTGCCTTGCCAATACCAGTATGAAGAGgtattgtgtt ... gctcgtccagGGTTGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATT
EST: ATTGCTGCATTTGATTTTGATGGGTGCCTTGCCAATACCAGTATGAAGAG GGTTGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATTEST: gi|211443974|gb|FL182596.1|FL182596
genomic: ATTGCTGCATTTGATTTTGATGGGTGCCTTGCCAATACCAGTATGAAGAGgtattgtgtt ... gctcgtccagGGTTGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATT
EST: ATTGCTGCATTTGATTTTGATGGGTGCCTTGCCAATACCAGTATGAAGAG GGTTGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATTEST: gi|60336621|gb|DN203594.1|DN203594
genomic: ATTGCTGCATTTGATTTTGATGGGTGCCTTGCCAATACCAGTATGAAGAGgtattgtgtt ... gctcgtccagGGTTGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATT
EST: TTGATGGGTGCCTTGCCAATACCAGTATGAAGAG GGTTGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATTEST: gi|91053260|gb|EB163678.1|EB163678
genomic: TTGATGGGTGCCTTGCCAATACCAGTATGAAGAGgtattgtgtt ... gctcgtccagGGTTGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATT
EST: ATTGCTGCATTTGATTTTGATGGGTGCCTTGCCAATACCAGTATGAAGAG GGTGGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATTEST: gi|71316663|gb|DR795006.1|DR795006
genomic: ATTGCTGCATTTGATTTTGATGGGTGCCTTGCCAATACCAGTATGAAGAGgtattgtgtt ... gctcgtccagGGTTGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATT
EST: ATTGCTGCATTTGATTTTGATGGGTGCCTTGCCAATACCAGTATGAAGAG GGTTGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATTEST: gi|60342489|gb|DN209462.1|DN209462
genomic: ATTGCTGCATTTGATTTTGATGGGTGCCTTGCCAATACCAGTATGAAGAGgtattgtgtt ... gctcgtccagGGTTGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATT
EST: CCAATACCAGTATGAAGAG GGTTGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATTEST: gi|60401163|gb|DN233970.1|DN233970
genomic: CCAATACCAGTATGAAGAGgtattgtgtt ... gctcgtccagGGTTGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATT
EST: ATTGCTGCATTTGATTTTGATGGGTGCCTTGCCAATACCAGTATGAAGAG GGTTGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATTEST: gi|32932991|gb|CF037803.1|CF037803
genomic: ATTGCTGCATTTGATTTTGATGGGTGCCTTGCCAATACCAGTATGAAGAGgtattgtgtt ... gctcgtccagGGTTGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATT
EST: ATTGCTGCATTTGATTTTGATGGGTGCCTTGCCAATACCAGTATGAAGAG GGTTGGTGCAGACCAGTGGCCTTTACAGCATAAATCAATTCCAGAAAAATTEST: gi|60351350|gb|DN218323.1|DN218323
genomic: ATTGCTGCATTTGATTTTGATGGGTGCCTTGCCAATACCAGTATGAAGAGgtattgtgtt ... gctcgtccagGGTTGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATT
EST: CAGTATGAAGAG GGTGGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATT
genomic: CAGTATGAAGAGgtattgtgtt ... gctcgtccagGGTTGGTGCAGACCAGTGGTCTTTACAGCATAAATCAATTCCAGAAAAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGATGGCCTTCATGCTTCATCTAAGATTGCTGCATTTGATTTTGATGGGTGCCTTGCCAATACCAGTATGAAGAGgtattgtgtttcataagacatggttttactctaaatggtattctagatgcttccactgaatattatttcgcctattctgttgtttattatggagacactt
- - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA