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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGACCAGGAAACAGAATCTTAGATATGATTATAGGACCATACAAGCTGTCTCGGCGGTGTGAAGTGACTGCAATCCTTATATTATATGGTCTGCCAAGgtaaattattttagggctagtttggcaacctaattttcccaaggaaaaatgaactaattttcttggggaaatggggttgccaaactagcccttaccttta...

Basic information

species Zea mays
transcript GRMZM2G099328_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G099328_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os12g40490.1 (Oryza sativa), 5'ss of exon 12
TTGGACCAGGAAACAGAATCTTAGATATGATTATAGGACCATACAAGCTGTCTCGGCGGTGTGAAGTGACTGCAATCCTTATATTATATGGTCTGCCAAGgtaaattattttagggctagtttggc----------aacctaa-ttttcccaagga------aaaatgaactaattttc--------ttggggaaatggggttgccaaactagcccttaccttta-------------------
||||||| |||||||||||  |||||||||| | || |||||| ||||||    | || |||||||||||||||||||| |||||||||||  |||| ||||| ||| | | ||   ||||||  |           ||| || ||||    || |      | ||| |||| || ||         |  |  |||  ||        ||||  |  |  | |||                   
TTGGACCGGGAAACAGAATTATAGATATGATCACAGCACCATATAAGCTGGAAAGACGATGTGAAGTGACTGCAATCCTGATATTATATGGGTTGCCGAGgtacattgtataagttttagtttttcctttagtactgaccaaagtttttgttagaatctttcataatcaactcatgttacatcagagtccgaaaaaacggaacataccactaatcactgtcgttataacgtgcttgtcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|44900705|gb|CK827250.1|CK827250
EST:     TCTCGGCGGTGTGAAGTGACTGCAATCCTTATATTATATGGTCTGCCAAG                         ATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCG
genomic: TCTCGGCGGTGTGAAGTGACTGCAATCCTTATATTATATGGTCTGCCAAGgtaaattatt ... ggttacacagATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCG
EST: gi|76910058|gb|DV163680.1|DV163680
EST:     GACTGCAATCCTTATATTATATGGTCTGCCAAG                         ATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCG
genomic: GACTGCAATCCTTATATTATATGGTCTGCCAAGgtaaattatt ... ggttacacagATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCG
EST: gi|14203375|gb|BG837052.1|BG837052
EST:     TCTCGGCGGTGTGAAGTGACTGCAATCCTTATATTATATGGTCTGCCAAG                         ATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCG
genomic: TCTCGGCGGTGTGAAGTGACTGCAATCCTTATATTATATGGTCTGCCAAGgtaaattatt ... ggttacacagATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCG
EST: gi|32859029|gb|CD998710.1|CD998710
EST:     TCTCGGCGGTGTGAAGTGACTGCAATCCTTATATTATATGGTCTGCCAAG                         ATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCG
genomic: TCTCGGCGGTGTGAAGTGACTGCAATCCTTATATTATATGGTCTGCCAAGgtaaattatt ... ggttacacagATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCG
EST: gi|71773668|gb|DR971565.1|DR971565
EST:     CTGCAATCCTTATATTATATGGTCTGCCAAG                         ATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTTG
genomic: CTGCAATCCTTATATTATATGGTCTGCCAAGgtaaattatt ... ggttacacagATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCG
EST: gi|31362847|gb|CD447204.1|CD447204
EST:     TCTCGGCGGTGTGAAGTGACTGCAATCCTTATATTATATGGTCTGCCAAG                         ATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCG
genomic: TCTCGGCGGTGTGAAGTGACTGCAATCCTTATATTATATGGTCTGCCAAGgtaaattatt ... ggttacacagATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCG