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ACCTTCGTCTCAGCCAACTCGAGATTCCCAATCTCAAGCATCCTCTATTTCACAAAAGGATGATACATATGAAGATATTCCGAATAGTCAGATACGCAAGgtaccgtgtttgactttattaatttcagtagatattccgaatagtcagatgcgcaaggccctgttttgtcatggggaagcacctctcgcagaaatacgtc...
species | Zea mays |
transcript | GRMZM2G082664_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CACAAAAGGATGATACATATGAAGATATTCCGAATAGTCAGATACGCAAG GTCATTGCCAAAAGGTTGCTCGAATCAAAACAGACGACTCCACATTTGTATEST: gi|60347222|gb|DN214195.1|DN214195
genomic: CACAAAAGGATGATACATATGAAGATATTCCGAATAGTCAGATACGCAAGgtaccgtgtt ... tatcatgcagGTCATTGCCAAAAGGTTGCTCGAATCAAAACAGACGACTCCACATTTGTAT
EST: CACAAAAGGATGATACATATGAAGATATTCCGAATAGTCAGATACGCAAG GTCATTGCCAAAAGGTTGCTCGAATCAAAACAGACGACTCCACATTTGTATEST: gi|50331519|gb|CO526645.1|CO526645
genomic: CACAAAAGGATGATACATATGAAGATATTCCGAATAGTCAGATACGCAAGgtaccgtgtt ... tatcatgcagGTCATTGCCAAAAGGTTGCTCGAATCAAAACAGACGACTCCACATTTGTAT
EST: TCAGATACGCAAG GTCATTGCCAAACCGTTGCTCGAATCAAAACAGACGACTCCACATTTGTATEST: gi|50331482|gb|CO526608.1|CO526608
genomic: TCAGATACGCAAGgtaccgtgtt ... tatcatgcagGTCATTGCCAAAAGGTTGCTCGAATCAAAACAGACGACTCCACATTTGTAT
EST: CAGATACGCAAG GTCATTGCCAAAAGGTTGCTCGAATCAAAACAGACGACTCCACATTTGTAT
genomic: CAGATACGCAAGgtaccgtgtt ... tatcatgcagGTCATTGCCAAAAGGTTGCTCGAATCAAAACAGACGACTCCACATTTGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCTTCGTCTCAGCCAACTCGAGATTCCCAATCTCAAGCATCCTCTATTTCACAAAAGGATGATACATATGAAGATATTCCGAATAGTCAGATACGCAAGgtaccgtgtttgactttattaatttcagtagatattccgaatagtcagatgcgcaaggccctgttttgtcatggggaagcacctctcgcagaaatacgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagaaata