1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GCATTTCTGAAACACATTGATTTTGAAGTTGTCCAGTGTACTGTAATTGCAAGCCCAGGTTTTACGAAGgtaatcctcacttgcttaaaagggaaacaatgtactataaagtagctcctttatttttttctcgaatacgttggagagctacgtatcattatattaatag...
species | Zea mays |
transcript | GRMZM2G044011_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATTTTGAAGTTGTCCAGTGTACTGTAATTGCAAGCCCAGGTTTTACGAAG GACCAGTTCCGTGATTATTTGTTTCTTGAAGCTGCACGGCGAGATTTAAGAEST: gi|67024357|gb|CO453106.1|CO453106
genomic: ATTTTGAAGTTGTCCAGTGTACTGTAATTGCAAGCCCAGGTTTTACGAAGgtaatcctca ... accataacagGACCAGTTCCGCGATTATTTGTTTCTTGAAGCTGCACGGCGAGATTTAAGA
EST: ATTTTGAAGTTGTCCAGTGTACTGTAATTGCAAGCCCAGGTTTTACGAAG GACCAGTTCCGTGATTATTTGTTTCTTGAAGCTGCACGGCGAGATTTAAGAEST: gi|71763506|gb|DR961443.1|DR961443
genomic: ATTTTGAAGTTGTCCAGTGTACTGTAATTGCAAGCCCAGGTTTTACGAAGgtaatcctca ... accataacagGACCAGTTCCGCGATTATTTGTTTCTTGAAGCTGCACGGCGAGATTTAAGA
EST: ATTTTGAAGTTGTCCAGTGTACTGTAATTGCAAGCCCAGGTTTTACGAAG GACCAGTTCCGCGATTATTTGTTTCTTGAAGCTGCACGGCGAGATTTAAGAEST: gi|74236267|gb|DT644181.1|DT644181
genomic: ATTTTGAAGTTGTCCAGTGTACTGTAATTGCAAGCCCAGGTTTTACGAAGgtaatcctca ... accataacagGACCAGTTCCGCGATTATTTGTTTCTTGAAGCTGCACGGCGAGATTTAAGA
EST: CCAGGTTTTACGAAG GACCAGTTCCGCGATTATTTGTTTCTTGAAGCTGCACGGCGAGATTTAAGAEST: gi|71442136|gb|DR823186.1|DR823186
genomic: CCAGGTTTTACGAAGgtaatcctca ... accataacagGACCAGTTCCGCGATTATTTGTTTCTTGAAGCTGCACGGCGAGATTTAAGA
EST: ATTTTGAAGTTGTCCAGTGTACTGTAATTGCAAGCCCAGGTTTTACGAAG GACCAGTTCCGCGATTATTTGTTTCTTGAAGCTGCACGGCGAGATTTAAGAEST: gi|50333168|gb|CO528294.1|CO528294
genomic: ATTTTGAAGTTGTCCAGTGTACTGTAATTGCAAGCCCAGGTTTTACGAAGgtaatcctca ... accataacagGACCAGTTCCGCGATTATTTGTTTCTTGAAGCTGCACGGCGAGATTTAAGA
EST: ATTTTGAAGTTGTCCAGTGTACTGTAATTGCAAGCCCAGGTTTTACGAAG GACCAGTTCCGCGATTATTTGTTTCTTGAAGCTGCACGGCGAGATTTAAGAEST: gi|32825337|gb|CD965059.1|CD965059
genomic: ATTTTGAAGTTGTCCAGTGTACTGTAATTGCAAGCCCAGGTTTTACGAAGgtaatcctca ... accataacagGACCAGTTCCGCGATTATTTGTTTCTTGAAGCTGCACGGCGAGATTTAAGA
EST: ATTTTGAAGTTGTCCAGTGTACTGTAATTGCAAGCCCAGGTTTTACGAAG GACCAGTTCCGCGATTATTTGTTTCTTGAAGCTGCACGGCGAGATTEST: gi|71302744|gb|DR787484.1|DR787484
genomic: ATTTTGAAGTTGTCCAGTGTACTGTAATTGCAAGCCCAGGTTTTACGAAGgtaatcctca ... accataacagGACCAGTTCCGCGATTATTTGTTTCTTGAAGCTGCACGGCGAGATT
EST: TTTGAAGTTGTCCAGTGTACTGTAATTGCAAGCCCCAGGTTTTACGAAG GACCAGTTCCGCGATTATTTGTTTCTTGAAGCTGCACGGCGAGATTTAAGAEST: gi|76016282|gb|DT943452.1|DT943452
genomic: TTTGAAGTTGTCCAGTGTACTGTAATTGCAAG-CCCAGGTTTTACGAAGgtaatcctca ... accataacagGACCAGTTCCGCGATTATTTGTTTCTTGAAGCTGCACGGCGAGATTTAAGA
EST: ATTTTGAAGTTGTCCAGTGTACTGTAATTGCAAGCCCAGGTTTTACGAAG GACCAGTTCCGCGATTATTTGTTTCTTGAAGCTGCACGGCGAGATTTAAGA
genomic: ATTTTGAAGTTGTCCAGTGTACTGTAATTGCAAGCCCAGGTTTTACGAAGgtaatcctca ... accataacagGACCAGTTCCGCGATTATTTGTTTCTTGAAGCTGCACGGCGAGATTTAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATTTCTGAAACACATTGATTTTGAAGTTGTCCAGTGTACTGTAATTGCAAGCCCAGGTTTTACGAAGgtaatcctcacttgcttaaaagggaaacaatgtactataaagtagctcctttatttttttctcgaatacgttggagagctacgtatcattatattaatag
- - - - - - - - - - - TTGAAG