1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GATGCCTGCATCGTCGGCGTCGCCCGCACGCCCATCGGCGCACTTCTCGGGTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacctttcgcgccactcgctcggctccgacgtttttggccgcatcagcaataacccatcaacaaattgccgcaacacgtgtggtccctcccaaatcccag
species | Zea mays |
transcript | GRMZM5G860137_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|93281948|gb|EB674212.1|EB674212
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|91051495|gb|EB161913.1|EB161913
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|149110543|gb|EE190473.2|EE190473
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|149087112|gb|EE176651.2|EE176651
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|211136636|gb|FL389507.1|FL389507
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|78087866|gb|DV516259.1|DV516259
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|71426143|gb|DR807193.1|DR807193
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|71439486|gb|DR820536.1|DR820536
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|149084568|gb|EE174037.2|EE174037
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|20803192|gb|BQ294242.1|BQ294242
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|89248149|gb|DY619935.1|DY619935
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|149000558|gb|EE037748.2|EE037748
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|89248499|gb|DY620285.1|DY620285
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|37419864|gb|CF647618.1|CF647618
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|149083757|gb|EE173120.2|EE173120
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|93016086|gb|EB641606.1|EB641606
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|148945943|gb|EC891236.2|EC891236
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|148947617|gb|EC893097.2|EC893097
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|149008549|gb|EE040725.2|EE040725
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|211403233|gb|FL400076.1|FL400076
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCATGAGGTTTTCAEST: gi|86475370|gb|DY241740.1|DY241740
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCAAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|148939632|gb|EC884275.2|EC884275
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|89760643|gb|DY688974.1|DY688974
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|211024306|gb|FL368563.1|FL368563
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|50337630|gb|CO532756.1|CO532756
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|149071725|gb|EE160115.2|EE160115
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|71442414|gb|DR823464.1|DR823464
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|78085615|gb|DV514008.1|DV514008
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|211111975|gb|FL386052.1|FL386052
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|149067527|gb|EE157733.2|EE157733
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|78078473|gb|DV506886.1|DV506886
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|76914731|gb|DV165656.1|DV165656
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|71298333|gb|DR785148.1|DR785148
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|50322372|gb|CO517498.1|CO517498
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCAEST: gi|149029957|gb|EE286286.2|EE286286
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
EST: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGG GTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
genomic: GTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacct ... caaatcccagGTGCTCTCAAGAGGGCGAAGGTCGACCCGGCGCTCGTGCAGGAGGTTTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGCCTGCATCGTCGGCGTCGCCCGCACGCCCATCGGCGCACTTCTCGGGTCGCTGTCGTCCCTCCCCGCCACCAAGCTCGGCTCCATCGCCATCCAGGgtacgtacctttcgcgccactcgctcggctccgacgtttttggccgcatcagcaataacccatcaacaaattgccgcaacacgtgtggtccctcccaaatcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT