1 5' 3' | 2 5' 3' |
GAAGCGATATTGCTGATGGTCTCGGAAAGGTCGATACAACAGAAGCTAGTACTGACCACACAAGTCGTCATCATGATACGATTGTTGATGAAGAGCACAGgtacttgtctgttttcaatatttttttaccattgcgatgctagtttttgtatgtgtctgccaagcacacgtacttagacgttgttggcgccactcccagc...
species | Zea mays |
transcript | GRMZM5G832138_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACTGACCACACAAGTCGTCATCATGATACGATTGTTGATGAAGAGCACAG GCAGAAGTTGAGGCAGATTGAAATTTCTGTCATGCAGTACCGTGAATCTCTEST: gi|71329052|gb|DR801232.1|DR801232
genomic: ACTGACCACACAAGTCGTCATCATGATACGATTGTTGATGAAGAGCACAGgtacttgtct ... ttctctgcagGCAGAAGTTGAGGCAGATTGAAATTTCTGTCATGCAGTACCGTGAATCTCT
EST: ACTGACCACACAAGTCGTCATCATGATACGATTGTTGATGAAGAGCACAG GCAGAAGTTGAGGCAGATTGAAATTTCTGTCATGCAGTACCGTGAATCTCTEST: gi|211345811|gb|FL036236.1|FL036236
genomic: ACTGACCACACAAGTCGTCATCATGATACGATTGTTGATGAAGAGCACAGgtacttgtct ... ttctctgcagGCAGAAGTTGAGGCAGATTGAAATTTCTGTCATGCAGTACCGTGAATCTCT
EST: ACTGACCACACAAGTCATCATCATGATACGATTGTTGATGAAGAGCACAG GCAGAAGTTGAGGCAGATTGAAATTTCTGTCATGCAGTACCGTGAATCTCT
genomic: ACTGACCACACAAGTCGTCATCATGATACGATTGTTGATGAAGAGCACAGgtacttgtct ... ttctctgcagGCAGAAGTTGAGGCAGATTGAAATTTCTGTCATGCAGTACCGTGAATCTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCGATATTGCTGATGGTCTCGGAAAGGTCGATACAACAGAAGCTAGTACTGACCACACAAGTCGTCATCATGATACGATTGTTGATGAAGAGCACAGgtacttgtctgttttcaatatttttttaccattgcgatgctagtttttgtatgtgtctgccaagcacacgtacttagacgttgttggcgccactcccagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccactccc