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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGGAGCTGACGGAAGGAAAGGGGAGGCTCAAGGCAATGTTCTTCTTGCATCAATTGAGAATATGCAATATGTTGTTACTGTAGATGTTCTTCATACTgtaagtcaaattgtgaagacaattaaaatatccttaatttttttgttattttctcttctaactatgacaatgtggctacag

Basic information

species Zea mays
transcript GRMZM2G519803_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G519803_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g25980.1 (Oryza sativa), 5'ss of exon 7
TGTTGGAGCTGACGGAAGGAAAGGGGAGGCTCAAGGCAATGTTCTTCTTGCATCAATTGAGAATATGCAATATGTTGTTACTGTAGATGTTCTTCATACTgtaagtcaaattgtgaagacaattaaa-atatccttaatttttttgttatt-ttctcttctaactatgacaatgtggctacag
|||||| || || |||||||||| ||| ||| |||||||||||||||| ||||||||||| |||||||||||||  || || || |||||||| |||||||||||| |||||| |||  || |||   | |   ||  || ||||||  ||  | | | || |||| ||  |      | |||
TGTTGGTGCCGATGGAAGGAAAGTGGAAGCTGAAGGCAATGTTCTTCTCGCATCAATTGAAAATATGCAATATGCAGTCACGGTGGATGTTCTCCATACTgtaagttaaattg-gaaagcacttattcaaagattttgttgttttgtagttactatatgctgactaagattaatcaattccag

upper sequence: GRMZM2G519803_T01 (Zea mays), 5'ss of exon 1
lower sequence: AT3G01150.2 (Arabidopsis thaliana), 5'ss of exon 5
TGTTGGAGCTGACGGAAGGAAAGGGGAGGCTCAAGGCAATGTTCTTCTTGCATCAATTGAGAATATGCAATATGTTGTTACTGTAGATGTTCTTCATACTgtaagtca----aattgtgaagacaatta-----aaatatccttaatttttttgttattttctcttctaactatgacaatgtggctacag
| | || |||||||| | |||||  ||  ||||  |||| || ||||| |  |  |||||||||||||| |||| ||| ||||| ||||||||||| || |||||  |    | |  || | |    |      ||  || |||| | | |     ||    || | |   | | | |            
TTTAGGTGCTGACGGCAAGAAAGTTGAATCTCAGAGCAACGTCCTTCTCGGTTTGATTGAGAATATGCAGTATGCTGTCACTGTGGATGTTCTTCACACGgtaaggaacaacagtcatgcacatttctgcttctaagcattcttagtctctcaaaaataacatcctttgcttctcatag-----------

upper sequence: GRMZM2G519803_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv14s0108g01030.t01 (Vitis vinifera), 5'ss of exon 7
TGTTGGAGCTGACGGAAGGAAAGGGGAGGCTCAAGGCAATGTTCTTCTTGCATCAATTGAGAATATGCAATATGTTGTTACTGTAGATGTTCTTCATACTgtaagtca----aattgtgaagacaattaaaatatccttaatttttttgttattttctcttctaactatgacaatgtggctacag---
| | ||  |||| || | ||||   ||  || |  | |||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||| || || ||| |    | || |||   |    ||       ||   |  | ||  || | ||| |      ||| |       |||      
TTTAGGTCCTGATGGCAAGAAAAAAGAACCTGAGAGTAATGTTCTTCTTGCTTCAATTGAGAATATGCAATATGCTGTTACAGTAGATGTTCTTCACACGgtgagtaattctatttatgatttcctccaatgatcttttttatcatgtgggatgtactcatactgtgatgtcggatcacctatttcag